G110723


Basic Information

Item Value
gene id G110723
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 754453 ~ 788626 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU125809
TAGTTCACTGTAGTGTGAGGCTGTTGGTCCGGTTCTATGGCTGTTGGGAGAATGAACAGATCTCCTTGATCATTTAAAAAAACCAAACTACCCTTAAAAGACGCAGTGTGTCGTCATGTTTTTGTGTAGATGGGAAGGTTGTGATAGTTTGCTCACGGACTGACTGTATTAACGGTCGTATGTTAACCTAGCTAAAGTGTACGCGCGACAGGAAATTTCAACCTGAACTTGAATAATAACGGTCGTCGTGGTTTATTCACCGACTTCCGTCCAGTTTCTTTTGTTTGTTTGTTTTGCCGTTTCTAACAACAACTAAAGGAGTACGAATGATCCAGATGAAGCTAAGAAGCGGATAAAACGCGGACGTAAATAATTGGTGCTTGAAATGGCGAAAATCTTTTTCGGACTCAGCCCAGAGATGGAATGTACGTCCACCTTTTATCTGGCTCAGGGACTTTGGACGACTCTGACAGACATGCTTGACTATGCAGGACTGGTGAAGTGAGTAGAAAAGGCCTTCAGCACTTGTCCTAGAATGTTTCTACTGATGCATGTGAATATTATGGGATGGCAAACCCGGAAGGTGACTATCTACCTTTCTCATGTTGGTGGCCTTGATGGTTTTGAAGGATCCCAGACTGAAGCTTTGGAGATAAAGAGGTGATAGGGGGTGTATTTAGTGCACAGCAAAGAGTTTTTGTGTCTTTTAGGTATAAGTGAGCATTTTAGTGTCTTACATCAGCTGATGCACAGTACCACCTAATGCTGTCAGTTACATGGGGTTTGTTTGACATTAGATTTTAGAAAACAGGAAGGTAAACAGGAAATGGAAGCTCCGTTGCAGGAAGAGGAAGGAGAGACTGTCGTTTGGGGTGAGGTAGTAGGTTGTATAGTTTGAGGGTTTAACCCTTGCTGTCAGATAACTATACAACTTACTGTCTTTCCCGAAGTGACCGTAGTGCCATCACTTCGGAACATGTCGGAGGACGCCAACAGGAAGGAAGAAATGACACATTTCCAGGATCCAACATTGTGTGTTTATTAAAGACATGCTTGATGCAAGCTTAAAAAGAATTTTAAAACATGTTTCATTCCATACTGTCAGCGTTACCAAAAAAACAACAACTTTGTATTAGGTACACATTAATGCCGGTTTGATACATTATAATGCATGCATTTGAGTTTGAGTTGCGGTGAATCCATAAAGAGGACAGTATAACCTGATAGTAATGATAACAATAGTGGCAATTAAAAGAAAAAGTACAAATAATTTTAAATGACAGACATGAAATCTTTTTTTCTTTCCTGTATTGGCATATTTCCTCTTGAATCAGAATGTTTGAAGTGGGCATATTGAAGCGCTTGTCCCTTTTCATTAAATAGCCAATAGCCATTAGTTACATCAAAGTCACGATTGACTTTGATTGGACAAAATATCAGTGTAGAATTTGTTGAAGAAAAAAGGCTCAACTGTCAGCTTGCATGTATATGGGATGGGTTCAAAGCTAATAAGAGCTACAAAATGTGAAAAAATGTGTCACTGTTTTGTCATGGAATATTCAGCAGTGATGTTCGTACAGGGTGAGGTAGTAGGTTGTGTGGTTTCAGGGTTGTGTTTTTACCCCATCAGGAGATAACTATACAACCTACTGCCTTCCCTGAAGGGCAGCAAAACGTCGCCAAACACCGTTCATACACTCTTAGAAGAGTGATTTCTTTCGCTTTTCTTAATTGTCTTGGTCTTCCAAGCTTCTACTTATGATGATCTTGCCACTTATAGGTGCATGAGCATTTACATCACACATGTGTAATACTTCAAACTGGAATAAAACGTTTGATATTTCAAAGTTTGCCTGATTTTTTTTTTTTTTTTTTTTCTTTGCCTCAAGCATGATATTGACGTTTCTGAAGGATACGTCAAAATAATCTTGTAATGAAACTCTATTATGAGTTAACGGAATAGTTCACTCAAAAATTAACATTCTGACATTTACTAAACTCATGTTTCTCCAAACCAGTGTGATGTCTTTCTGGAACACTAAAGGTGCATTTTTGAAGAATATCCCCTGCCGTTCTTTTCAGTATAATGAAGTAAAGGTGGTATGGACTAGATTTATGGCACATTTACGTTCTGTTTGAGGCTCGGAAGCACCAGTCAGCATTCACTTTTATTGTACTGAAAAGAGTATTCTTCCAAGTCTCCTTTTGTGTTCTATAATAAAAAGAAAGTCATATAGGTTTGGAATGTCATGAGGGTGAAATGACAGAAATGTCATTTTTGAATGAACTGTCCCTATAAGATCACATTTCCCATCATCCAGTGACAGGTGGGCATGAATGAAGAGTATCTCCTGTCTCCTGCACAAGGATGTAATGAGACCACAGCATTGTATTATTTCATTTGTTTATTATTAAAGATGCAATGCAGAGCCAGGCAGAGTGCTTCTGCCAGGGTAGCTTGTATTGTAAATAAAACATGGCCATGGCTCCAGACGGCCATTAGCCGATGTTAACAGCTACAGGGCTGTAGGCAGGCTGACCTTTCACTGCTGCACAATTTATGGGCACTGGCTGGCAGATCTCCACAGGAGCGCCCCTAGACTGGCACTCACAGGAGAGGAGTATCAGCAAGAAAGGTCAGAATGTGATAGCCATGTCACCTTGAAAAAGTTTTGCTTCTTTGGAAACAGGTGTTATGCATGCTTATTTCGGCAGCATTACCTGGGGGAGTGCAACAGCATTGTTGTTACAAAACTACTTTGTTATGCACATTAGAGTAATCCACAGAGGATAAGGGTTTAATATTATTCCCCTGTGACTGCCTTAGTTTTTACCCTTTCAGACCTCCAGAGCTTTTTTGTGCGTCTCTTTACAAAGACACTATTAAATAACCCAATAGAATTATGGTAAGCCCCTATGTAATAAAATTGGGATTTGGCTTTAAATGAATTTAAAATACATAAAATTACCTACAAATGGATGAAAAATATCAATGAATGAATAAATACGTCAGAAAATTGTGACAGGGGGAAGTTTAGAGAAAAACAGTAAATAATAATTAAAATAAAATAAGATTGAACTAAATAAATAGATTAAAATAAATACAATACAAAAAAATATGTAAATGTGTATCTAACAGTACAGTAGTGAGTAGGAAAAAAATATATAATTTGGTAACTTTATGCATGAAAACATGGCTGCACTTTCATTTTGGGGGTCCCTTGCACCAGAATGATCATATTTAAGGGTTTGTGGCATCTAAAAGATTAAAAAGCCCTTAGGCTAATAAACAGAGTAAAAATATCTATTTAAATTTACAGATTATAACATCTGTGATTGATTTTAGAATATCACCAGTAGGTGGCAGCAGAGGTGCATTATAGTGTCCCTATAACCAACAAAGTAAATTGGACACCAAAGGTAAAGCCTCTTTATTGTTATGCGTCATAATATTTTAATTAACCCTTTCATGCATTAATTATGACAGCTTCGGTCAGGATTAGCCCCCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU125809 True 3393 lncRNA 0.38 3 754453 788626

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028721 NA non-coding NC_007115.7 CM002888.2 18654682 ~ 18679692 (-)
grasscarp (Ctenopharyngodon idella) G215653 NA non-coding CI01000050 null 5909722 ~ 5909955 (+)
grasscarp (Ctenopharyngodon idella) G273050 NA non-coding CI01000068 null 291930 ~ 309104 (-)
eurasian perch (Perca fluviatilis) G228384 NA non-coding NC_053134.1 CM020931.1 17137271 ~ 17138351 (+)
bowfin (Amia calva) G112802 NA non-coding CM030134.1 CM030134.1 22257550 ~ 22258386 (+)