XLOC_008179 (unc5a)


Basic Information

Item Value
gene id XLOC_008179
gene name unc5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 51164056 ~ 51619458 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015921
CGCGCTCAAGCCCGTATCCAGCGATCTCTTTATACCGGAGCAACTAATTCTGCAGCGGAGAGTAAAAAGACGGACGTTTGctttttattctctctctctatctctctttcttCACGCGtctggagtgtgtgtgcatgtgtgtgcgtccctttgcatgcgtgtgtgtgagtgagtgtgtttgagCTGAAGAAattagagccgcgtctttatttaccACACCTGTGATGCGCTGCTGTCTCTGAGCAACCAAGACGCGCTGATGGCAAAGGTACAGCGGAGGATTCGTGTTGAAGAGGACTTATAAATGCGCTCATCGCTCTGATATTACCAAACCTGAGCCTGGACAAGACCGCAGATACTCATTTTACAGACTTAAACTTGAAGCAGAAGGTGATAAAGATGCCGTTACACCTGAGTCCCTTTGTCCGCTGGAGATCCGGGGTTGTACTCACATGGATCTGCTTCTTCTTTTCTTCGGGATTTACCTTCGCTGGTGGAGAACATGCAGCTACCGTCACGCATCCACTTCCTGTGGCCTTCTCGGACCAGCTGCCTCACTTCCTGATTGAGCCGGATGATGTTTATATAGTGAAGAATAAGCCGGTGACTCTGACCTGCCGCTCCACACCCGCCACACAGATCTACTTCAAGTGCAATGGAGAGTGGGTTCATCAGGACCAGCACCTGATCGACAGAGACGTTGATCCTGCTACAGGGCTGCCGGTGATGCAGGTAAAGATCGACATCTCCAGACAGCAGGTGGAGAAGATCTTCGGTCTGGAGGATTACTGGTGTCAGTGTGTGGCCTGGAGCACTACAGGAACCCAGAAGAGCCAAAAGGCTTTCGTGCGCATCGCCTATCTGAGGAAGAACTTTGAGGAGGAGCCTCTTGGTAAGGAAGTTGCTCTGGATCAGGAGCTCCTCCTGCGCTGTCATCCTCCTGAAGGTGTTCCTCCAGCAGAGgTGGAGTGGCAGAGGAACGAGGAGCTGATCGACCCCAAGACTGACCCCAATTTCTTCATCACCACAGACCATAATCTGATCATCAAACAGACCCGTCTGGCCGACACCGGCAACTACACCTGCGTGGCCAAGAACATTGTGGCCCGACGCAAAAGCTCCTCGGCCACTGTCATTGTCTACGTGGATGGAGGCTGGAGTGAGTGGAGTAAATGGTCTCCATGTGGAGCCGACTGCAGTATGTGGAGGAGCAGGGAATGCACACAACCAACACCCGGCACCGGTGGGAAAGACTGCCAGGGCCTGGATCTGCAGTCACTGAACTGTACCAGCGAACAATGCCCGCAGACGGCGTCGGGTGCGGAGGACGTGGCTCTGTATGTGGGTATGGTGACGGTGGCTCTGTGTCTGGCTCTGCTGCTGGTGGTTCTGGTTTTGGTTTACCGCAGGAAGAAGGAGGGTTTGGATGCAGACGTGGCCGACTCCTCCATCCTCACCACCGGCTTCCAGCCCATGGGCATCAAGCCCTCCAAGCCAGGTGTGTGGGCACCGCGTAGAGCCGCCCGCTGCAAAAACTCTCACCTTCTGACCATCCAGCCGGATTTGACCACCAGCACCAGCAGTTATCAGGGCTCGCTGCGCTCTCGGCACGAGGTTTCTAGTAAATTCTCCATGAGTAACGGCCCGCTGCTGGATCCGCTGCCGAACGGATCACACACACTGCACAACGGCAAACTCAGCAGCGATGCAGATGACTTCATGAGCAGACTTTCCTCGCAGACTTACTTGAAGACGCTTCCCAGAGAAAACGGAAACACCTCGTACGGCACTTTCAACTTCCTGGGCGGACGACTGACGCTGCCCAACACGGGAATCAGCCTGCTCATCCCGCCAGAGGCCATTCCCAGAGGCAAGATTTACGAGATTTACCTCACTATTCAGAAGAAGGAAGACATGAGgCTGCCGCTGGCGGGCTGTCAGACGCTGCTGAGCCCCGTGGTGAGCTGCGGACCGCCCGGCGTCATGCTCACCCGGCCCGTCATCCTCTGCATGGACCACTGCTCAGATGCCTGCCTGGAGAACTGGGCCATCCGGCTTAAGAAGCAGTCGTATGAGGGCACCTgggagGATGTTCTTCTGCTGGGTGAAGACTTGCTGTCGGAGCCGTATTACTGCCAGCTGGAGGCAGAGACGTGTCGGGTGTTCACCGAGCAGCTGGGTCGCTTTGCTCTGGTCGGGGAGTCGCTCAGTATGGCTGCTGCTAAACGGCTGAAACTGCTGCTGTTCGCTCCGGCCTACTGCTCCACGCTGGAGTACAACATCCGCGTCTACTGCACTGACGACACACAGGACCTGCTCAAGGAGGTGATGCAGATGGAGAGACAGCTGGGAGGTCGACTGATCGACGAGCCGCACGTCCTGCTCTTCAAAGACAGCTATCATAACCTGCGTCTGTCCATCCATGacatgccacacacacactggaggagCAAACTACTGGCCGGATACCAGgagatCCCGTTCTACCACATCTGGAGTGGTTCTCAGAGGACTCTTCACTGCAGCTTCACCCTGGAGAGGCAGAGTCTGAGCACCAGTGATCTGTCCTGCACGCTGTGTGTGTGGCAGGTGGAGGGAGAAGGACAGAGCTTCAGCCTCGACTTCAACATCGCTAAGGACATCAGACCTCTGGACTCAGACTTCCTGCTGCTGGAGAACTGCAGCCCGGCACTGGCCGGCCCAAGCGCTTTCCAGATCCCCTACCTGATCCGACAGAAGATCTGCAGCAGTCTGGACGCCCCCTGCCCAAACGGAGCCGACTGGAGACTGCTGGCCCAGAGACTCAAGCTGGACAGGCACATGAGTTTCTTCGCATCCAAATCGAGCCCCACATCAGTGATTCTGGACTTATGGGAAACGCAGCATTTCCACAGCGGCAATCTGAACCAGCTGGCGGCGGTGATGGCGGAGATCGGCAAACAGGAGGCCATGATATTCCTGGTGTCAGACGGAGAGTGCTGACGCTTTCAGAGAAACACCACCAACAGGGTTTATCCAGCGGGAAACACACAACAAAACCTGGCCGGCCTTCTAGACGTACTGtgactgagacacacacacaaacacacacggccCTTTCCAAAACACCTGTATAGTAAAAACCCCCGAATCTGTGACCAACACGTCCTTTTCTGACCGTCCGCATCTTAATGTCAGACTGCAAACTAAAGCGTAGGAATATTTTGCCAACAGATTCAGATTTGAGACATGCATTTTGTAAATGTTGCGCCATTTAGCAATATGCAAACACGCGTATCGATGACAATTTCCTTTGGCCGACACGTTATTTCCTCTTACCTCACAAAAGCATTTAAGAATTCGCTCAATTTCAGGACGGAAAGCATTGTTTGTTTGGGTAGAGCCATCGCTTGTGCACTCAACAGTGTGTTCAAAAACCCATGAAGCCATAAAGTCCAAATTCACTTCGatgc
>TCONS_00016092
cctctctctctcttcctgctCTATACATCGCGTATCCTCACTCCTGCATTGCTGTAGCAGCAGATGTGCACGCGCTCAAGCCCGTATCCAGCGATCTCTTTATACCGGAGCAACTAATTCTGCAGCGGAGAGTAAAAAGACGGACGTTTGctttttattctctctctctatctctctttcttCACGCGtctggagtgtgtgtgcatgtgtgtgcgtccctttgcatgcgtgtgtgtgagtgagtgtgtttgagCTGAAGAAattagagccgcgtctttatttaccACACCTGTGATGCGCTGCTGTCTCTGAGCAACCAAGACGCGCTGATGGCAAAGGTACAGCGGAGGATTCGTGTTGAAGAGGACTTATAAATGCGCTCATCGCTCTGATATTACCAAACCTGAGCCTGGACAAGACCGCAGATACTCATTTTACAGACTTAAACTTGAAGCAGAAGGTGATAAAGATGCCGTTACACCTGAGTCCCTTTGTCCGCTGGAGATCCGGGGTTGTACTCACATGGATCTGCTTCTTCTTTTCTTCGGGATTTACCTTCGCTGTGGGCTCACACGGACTAGTTTGGGCTTGCAGAAATCTGCTTTGCATTGTCAAGAGAAGGATGAGAAATACGGAAAGGTTTCGGCTGTGGGAAAGAAAGATGACTGTGGGAAAGTCTGGAGTAATCATCACTGTAGAGCACCCTTGAGGAGCAGCTTTAAAATTTCACACTTGGCTTATATTCTCCGATGTGGACAGAGGGCTGACTTGTTAAAAGTTGTGTAATTAGCTATCTTGCTTTAGGAAATGCTGAAGTTTAAGAGTTGTGTTTTCTTGTGCATTAATTAGAGAAGGATTTCTGCATAAATTAGGATGAAGTAAACATCGGCACCCTAGGGATTCATATTCCTGTGCATGGTGGCAtttttggatttgttttttttttccatgcagcTAGGCTTGCGCaatgtattgtttcagcatcaatatcacaatgtgtgaatCTGCTGAGTGagatctgcaatgtcaagttaGGATTATAAAAAGACAGAAAGCACAGTTCTGAACTTATGAAATGTTTGACCGTAATATTGATAGAGTTATCTATTGTTCTGTAGTGTGTGGCTGTGTAGGAGAAATGATAAAATGTTTAGCATTAACTAAGAtgaattatattgaattatttctACAATGAAGATTACAGGCAATGGAAATCTGCTTctgcaaatgaataaaaaaaaacaataaaaagattattCTGACTCTTTATCTCAGAGTTGAGTGATATGAACTCACAATTCTGGCTTTTTTATTCAGGTTTGTGAGATGTAAACTTGAAATTGTGAGTGAAATcataattgtgagatataaacttctgaattgtaaagtcagaattctgagaaataaaatctcaaatgcttgatttaaagtcagaattcatGGAAATAGTCGCAATTGCAACATATAAAGTgagaattctgacttcatatagcAATTTTGAGAAATATAATCACAATTGCAATGACATAAAGTCAAAAATCAGACAAATAAAGTCACAATTGTGATGTAAACTCACTATTGCAATGAAATACACCCAGAAATGAGAGAAATAAAGTCGCAATTGTGATGTAAACTCACTATTGCAATGAAATACACCCAGAAATGAGAGAAATAAAGTCGCAATTGTGATGTAAACTCACTATTGCAATGAAATACATATAGAAATCAGGGAAATAAAGTCACAATTGTGATGTAAACTCACTATTGCAATGAAATACATCCAGAAATGGGAGAAATAAAGTCACAATTGTGATGTAAACTCACTATTGCAATGAAATACATCCAGAAATGGGAGAAATAAAGTCACAATTGTGATGTAAACTCACTATTGCAATGAAATACATATAGAAATCAGGGAAATAAAGTCACATTTGCGATGTAAACTCACTATTGCAATGGAATATAGCTATAAATTTGAGATAAATTCACAATTGTAAGTTATAAAAGTCAAAATTCTGAGTTAAATCACAATTGCAtgatttaaagtcagaattttgagataAAAGTCAAAATTCTaatatatgaagtcagaattctgagataaGGGTCTCATTTTTGTGATGCAAAttcagaattctgacttcatatcTTGTAATTCTTAGAAATAAAATTGCAATTCTGATATAAACTTGCAATTGCAATCGAAAAAGTACAGTTTATACAtatactaaattggccatagtgtgtgtaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtttgcgtgcgtgtgagaatgtgtatgggtgtttgccaatattgggttgcagctggaagggcagccgctgcaaaaaacatagtctggaattgttggtggttccttccactgtggtgtcccctgataaataaaggcattaaggcaaagcaaaatgaatgcatgaatactTCACAATAGTAAATCCATTAACTAATGACaccttactgtaaagtttaaccagaaaaaaacaaaatattattttccaaTATCATAATTCCAGCAGATTTCAGGCCATCATGTatagaagaataataataaaaaaagatcctAAATTCCCACCATCTTCATATGCTCTGTTTAATTTGTCAAGGACACTTATCTAGCTTGTCTTGCGAATGGGAAAAGATCACACGGGCACGTTTCTATTCTCCAGACTTGCGAGGTGGAGGAGGAGAAGGGAACAAAAAAACGTAAATTGGATGGAGGAGAAATAATGGAAGCTTGTGCTCGCAGACATTGTTAGTCCAGAGATCATAGAAGATCGCACAAGGTGCTCTCGCCAGGGGAGAAAACAGGCTGACGGTGCATTTTtgtacatagaaaaaaaaaaagaaaaagcctgAACTTGTCTTTCCCCTGAAACATAATCCGGTCAAAAATAAAGGTCGCCCTGTCAGTCTTGATCAGAGCGAACACCAGAGACTCTTCCCTGAACAATGTGCTGCCTTCAGGGAGATCAGCTACCGTCCAGCCGACAGGAGGCTTTTCATCAGTTTACAGACTCAAGGAATCAGCAcattgtctttgtgtgtgtgtgtgtgtgtgttttgttagtGCCTCTGTTAGATTCACTTCAGGATTTTGTTGTGCACTGCTTTTCTTCAATTTTTAGTCTCGTTTTTAGAATAAATATCTACAAATgtttaaatcaggaagcattacATTTAGATATGTGCGTCtgataaagttttttttccctcaattttttgatttatttttccgtGCAGCAAGACTTGCGctttatattgtttcagcatccatatctcaGTGTGTGAATCTGCTTTACGAGATCTGCAATCGCGAGTTGGGGTTATAATTATCCAGAAATCAGAACATGTTGAATCTTTAATCGTAATAGTGAAAGATTGGTTTTAAGTGTGTGGCTATGTAGGATTTAAAGCAAATGAAAACCATTTAGCCATGAGAAATTATAAAACTTGTATCGTTAGCAAAGATTCattgtactgtatttgaattatttctacaatgaagactatatgGAAGCCCTTTCCCTCTGTTACACCACGTTGTCGttggtgtctgtgtgtttgtgttttgctaGAGCTTGTGTTAGTGCCTCTGCTATATTTACTTCAGGATTTTATGTGCACtgcaaaaaaggcttttttttttagcttgaatTTTAGTCCtgtttctagaccaaatatctacaaatttaaAATCATGAAGCATTACATTTAGATATGTGCATCTGATAGAgagagttttgtttttttcaacatttttggatttatttttcCATGCAGCAAGACTTGCgctatatattgtttcagcatccatatcgcaGTGTGTGAATCTGCATTGCGAGATCTGCAATCGCAAGTCGGGGTTATAATTATCCAGAAATCAGAACTTGGGGAATCTTTAACCATAATAATGAAAAATTAGTTTTAAGTGTGTGGATATGTAGGATATCAAGcacatttaaattattaagtCACAAGAAATTATAACAAAGATCAAAGTtgtgttttaattatttctaCAATGAAGACTTGATCTATGGAAGCCCATATCCTCTGTACCACATTGTCTTTGTAGTGTATCGTGTagtcatatatacacacacacacacacacacacacacacacacatttggttAAATCAtgaaacattacatttatatatgtgCATCTAATagtgaaagttttatttatttatttatttatttatttttggttttgttattataaaacttgtagctttaacaaagataATTGTACTATATTTGAGTTATTTCTACAATGAAGACTATGTAAAGTATTTTCTAGACAATGAAAACATATAgtctttttttaacaaataatatgcCAAGATAaggtgagttttcccttaaaacaagc

Function

symbol description
unc5a Predicted to enable netrin receptor activity. Predicted to be involved in anterior/posterior axon guidance. Predicted to act upstream of or within netrin-activated signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; and trunk. Orthologous to human UNC5A (unc-5 netrin receptor A).

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0033564 anterior/posterior axon guidance biological_process
GO:0007411 axon guidance biological_process
GO:0007165 signal transduction biological_process
GO:0038007 netrin-activated signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005042 netrin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080219-19 Predicted to enable netrin receptor activity. Predicted to be involved in anterior/posterior axon guidance. Predicted to act upstream of or within netrin-activated signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; and trunk. Orthologous to human UNC5A (unc-5 netrin receptor A).

Ensembl:

ensembl_id ENSDARG00000099034

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015921 False 3452 mRNA 0.54 15 51164056 51619388
TCONS_00016092 True 4452 lncRNA 0.36 2 51611220 51619458

Neighbor

gene id symbol gene type direction distance location
XLOC_008178 cltb coding downstream 124354 51023954 ~ 51039702 (-)
XLOC_008177 faf2 coding downstream 149764 50994138 ~ 51014292 (-)
XLOC_008176 NA coding downstream 177450 50972410 ~ 50986606 (-)
XLOC_008175 CU302253.1 coding downstream 271614 50839282 ~ 50892442 (-)
XLOC_008174 NA coding downstream 467274 50693992 ~ 50696782 (-)
XLOC_008181 CABZ01066915.1 coding upstream 133622 51753080 ~ 51753197 (-)
XLOC_008182 NA coding upstream 206620 51826078 ~ 51837387 (-)
XLOC_008183 cplx2 coding upstream 209859 51829317 ~ 51855047 (-)
XLOC_008184 NA coding upstream 283701 51903159 ~ 51903638 (-)
XLOC_008185 CABZ01075745.1 coding upstream 429700 52049158 ~ 52049274 (-)
XLOC_007641 CU855896.1 misc downstream 48756216 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 48756625 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 48756984 2406945 ~ 2407072 (-)
XLOC_008173 NA non-coding downstream 840282 50323136 ~ 50323774 (-)
XLOC_008170 CABZ01074913.1 non-coding downstream 1220257 49931223 ~ 49943799 (-)
XLOC_008169 NA non-coding downstream 1245231 49913511 ~ 49918825 (-)
XLOC_008186 NA non-coding upstream 570419 52189877 ~ 52191692 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_02895656_02896151 NA coding CI01000000 null 2895055 ~ 2896579 (-)