Gene
RNA
| Item | Value |
|---|---|
| gene id | G110897 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000020 |
| NCBI id | null |
| chromosome length | 7209782 |
| location | 1468184 ~ 1476360 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU126014 | True | 2055 | lncRNA | 0.51 | 8 | 1468184 | 1476360 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000020_01447228_01456657 | CHPT1 | coding | upstream | 10589 | 1446404 ~ 1457595 (+) |
| CI01000020_01416902_01441420 | MYBPC1 | coding | upstream | 26628 | 1416902 ~ 1441556 (+) |
| CI01000020_01400705_01401757 | NA | coding | upstream | 66102 | 1398296 ~ 1402082 (+) |
| CI01000020_01395424_01397266 | SPIC | coding | upstream | 70841 | 1395126 ~ 1397343 (+) |
| CI01000020_01383268_01384854 | DNAJB9B | coding | upstream | 82143 | 1383268 ~ 1386041 (+) |
| CI01000020_01484806_01488530 | NA | coding | downstream | 8256 | 1484616 ~ 1489015 (+) |
| CI01000020_01500660_01504462 | KLHL42 | coding | downstream | 24300 | 1500660 ~ 1504827 (+) |
| CI01000020_01510968_01538886 | NRIP2 | coding | downstream | 33219 | 1509579 ~ 1539130 (+) |
| CI01000020_01585338_01604278 | NA | coding | downstream | 108504 | 1584864 ~ 1604586 (+) |
| CI01000020_01608261_01638242 | NA | coding | downstream | 131477 | 1607837 ~ 1638943 (+) |
| G110909 | NA | non-coding | upstream | 80281 | 1387609 ~ 1387903 (+) |
| G110908 | NA | non-coding | upstream | 80643 | 1387338 ~ 1387541 (+) |
| G110892 | NA | non-coding | upstream | 87732 | 1380212 ~ 1380452 (+) |
| G110891 | NA | non-coding | upstream | 88272 | 1379678 ~ 1379912 (+) |
| CI01000020_01375811_01378288 | AVPR2L | non-coding | upstream | 93305 | 1373164 ~ 1379068 (+) |
| G110928 | NA | non-coding | downstream | 2734 | 1479094 ~ 1479329 (+) |
| G110940 | NA | non-coding | downstream | 38321 | 1514681 ~ 1516164 (+) |
| G110950 | NA | non-coding | downstream | 60593 | 1536953 ~ 1538262 (+) |
| G110952 | NA | non-coding | downstream | 66673 | 1543033 ~ 1543255 (+) |
| G110954 | NA | non-coding | downstream | 68772 | 1545132 ~ 1545347 (+) |
| CI01000020_01083614_01106789 | PLXNC1 | other | upstream | 381411 | 1083230 ~ 1107257 (+) |
| CI01000020_00810993_00815495 | CDPF1 | other | upstream | 651674 | 810899 ~ 816510 (+) |
| G110589 | NA | other | upstream | 1241336 | 180778 ~ 226848 (+) |
| G110562 | NA | other | upstream | 1420144 | 30693 ~ 48040 (+) |
| CI01000020_02444149_02444833 | NA | other | downstream | 967884 | 2443278 ~ 2444944 (+) |
| G111183 | NA | other | downstream | 1171151 | 2647511 ~ 2658913 (+) |
| G112679 | NA | other | downstream | 1824811 | 3301171 ~ 3303730 (+) |
| G112753 | NA | other | downstream | 2238021 | 3714381 ~ 3733586 (+) |
| G113050 | NA | other | downstream | 2950298 | 4426658 ~ 4439762 (+) |
