XLOC_008182


Basic Information

Item Value
gene id XLOC_008182
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 51826078 ~ 51837387 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016532
GTCAGATcagagtccacacacacacacacgttcgaCATGcacctttaaacacacacacacacacacacctgtttggAGTCCAGAGCTCACAGCAGGAATCTTCCTCCCTCCTCATCATCTGTCTGTAAATAAGTGATAATAAACAGATACACctatatatggatatatatatatatatacactagcgATAGCTGATTCAGATATATACGAATAATCTCTGAGTAAAAGCCATAAACTAATGCCGGAGGCGTCTCTCCAGTCATCTATTTTTGATTGTTGCTCTGTTCTAGATATTTCCATGCATCATcctatagatataaatatatatactgtaaacggATTCGCTCATCGACCATCACATGGTGtccgatcacacacacacacacacagacagcgtgGCCCATGATGGTGTAGTGCCGTTTCTCCGCATGCGAAACAGCTCTCCATGCTCCTCCTGTGCACTGTACGCGCTCCAGCTCCAACACGCTCCAGCTGAAGGCAATAACTGAGCTTGTTGTCTGTAGATGTGCATCGCCTCACTCATTAAACAGATTCAGCACTGGCGAGTGTTGCGTTCCGTATATTGTACACCGCAGAACCTCCATCACACACTACTACAATTGGACCAATAGGGCTATAGTCATCCACAGAGGTGAATCTGGATCATCGTGCTCATCTGCGCTGCTGTACAGTCGTGTGTCGTGTTTCTCTCTTCACCTAAACAGACAGTGACAATGGTGCAATATTTGTTTCTGAATGAAGATGTGCTGTGCCGATGCTTGATTATAGATCAGCAATAACAGACAATCTTCATCGTTATCTATGTTTAATCGCTCCAGAATGTCCATGTCGTCTTCCTAGTTTCAGTCAAACCAGCTTATTCAAGGAGAGATTAGTTAGGGTCTCTAAGCGCTCGCTTCTTTATTCGTCACACTGATGAACAGGCGTCTCTTACACAGAGCTTGAGTCTGTTTCCAGTGCAAACATCTGAAACTCTTAAACGGAGAAGACGTAGACGAGCACTGATAGAGTCTTGTGTTCAGAATAATGAGTCCAAATGAAGCGAGTTCTTCAGTAACACAAGCAGATTAATCAGATCCCGTTCTGCTCGTCCACATGAAGCTTCTTGATGTAAGAATGTTGAGATATTTGCAGCAGAAGCGAGACCGAGCTCAGAGTAAAGCCTGTTCTGCAGTGGGTTTTCCTCATCCAGGTGAAATCTGATGATGGTAACTCAGATGTTAAACTCAGACTGTGTTTATAGACATCTTTTATATCATGCTCTGCCtgtgtttcattcatttatattcacaAACACTGTAAATAACGACGCACATGTAAAACACCGCAGAAAAGGTGAACGTAGTGTAGGATTAAGCTGCCATCGTGTCGTTTTAAACATTCCAGATTTTCCAGACATTCCGTGAAGAAAATATTGATGAGGAATAATATCCAGACATCTGAGTGATGTCAGGAGTAACATATGCTAATGTCTGTGCTGTGAATGTGGAGTCcctcatgaatattaatatcCGTGGCCACGCCTCCAGATCTGACTGCCTTTCTCAGACGTGTAAAGTCTGATGTGCCATTCTCTCGTGTCCAGACGCACAAAGCTCTGCGTTCGCTCCTGTCCGACTGCACTAATGGATAATACACTGCCCAATCACATCACTCCTTTATTAAACCAAAGAGTGTTGCTGTGTGTGCgagagagtgtgtgtctgtggaCAATATCCTTTATTTGGGTCCTCCTTTGGGTTTGGTGTCTCAAACTGAACAAATAAACCATCAGAAAGAAAAACAATCAAGAGCAAACGTCCCTGAAGATGTGTTACATGTTGGAGAGTGAAGAAATAATCATGCGTcctcatctacacacacacacacacacacacacacacaccctccacTGGAGTCACTGCGTTTCTCTCCATGATGAAGATACTGCCGTCATTACAGCACATGATGAATATGCCATAGTCGTGATCTCTGAATGTACGTGTCCTGCGCAGCTCTTAAAGCGCCGCTGTGGTTCCTCTGTCTGTGAGCTGTTCCTGTCTCTCGATGGTTGTGTTCTGGAGATATTCTCTTTAATTCTGTGTATTCTGATATGATTTCTGTAGTGTGTATTAAGGTCAGAGTatcttttctctctctgtttctgtATGCATGCGTTGGCGTgtcccatgtgtgtgtgtgtgttgtagatgatgtttgtgtgtgtcttctGTGTTTTCATTGCATGCTCTGATAGACAGACTGTAGACTGTAACATTCCTGGatcgccacacacacacacacacacacataataataataataataataataataaagtgatttgatagatctgctgtggtgaccgaGTGTTTCTCTGCTGGAAATCTCCCGCTCTACATCTCTGCAGCACACACACTTCAG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0006887 exocytosis biological_process
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0045161 neuronal ion channel clustering biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0007275 multicellular organism development biological_process
GO:0032940 secretion by cell biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0046903 secretion biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048284 organelle fusion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0042551 neuron maturation biological_process
GO:0099500 vesicle fusion to plasma membrane biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0048880 sensory system development biological_process
GO:0007626 locomotory behavior biological_process
GO:0023061 signal release biological_process
GO:0061024 membrane organization biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0003008 system process biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0051640 organelle localization biological_process
GO:0051648 vesicle localization biological_process
GO:0051650 establishment of vesicle localization biological_process
GO:0016050 vesicle organization biological_process
GO:0150063 visual system development biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0033176 proton-transporting V-type ATPase complex cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex cellular_component
GO:0045202 synapse cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0031201 SNARE complex cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016532 True 2424 lncRNA 0.43 2 51826078 51837387

Neighbor

gene id symbol gene type direction distance location
XLOC_008181 CABZ01066915.1 coding downstream 72881 51753080 ~ 51753197 (-)
XLOC_008179 unc5a coding downstream 206620 51164056 ~ 51619458 (-)
XLOC_008180 CABZ01070359.1 coding downstream 552778 51273185 ~ 51273300 (-)
XLOC_008178 cltb coding downstream 786376 51023954 ~ 51039702 (-)
XLOC_008177 faf2 coding downstream 811786 50994138 ~ 51014292 (-)
XLOC_008184 NA coding upstream 65772 51903159 ~ 51903638 (-)
XLOC_008185 CABZ01075745.1 coding upstream 211771 52049158 ~ 52049274 (-)
XLOC_008186 NA coding upstream 352490 52189877 ~ 52191692 (-)
XLOC_008187 polr2b coding upstream 540170 52377557 ~ 52408817 (-)
XLOC_008188 rest coding upstream 580860 52418247 ~ 52433292 (-)
XLOC_007641 CU855896.1 misc downstream 49418238 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 49418647 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 49419006 2406945 ~ 2407072 (-)
XLOC_008176 NA non-coding downstream 839472 50972410 ~ 50986606 (-)
XLOC_008174 NA non-coding downstream 1129296 50693992 ~ 50696782 (-)
XLOC_008173 NA non-coding downstream 1502304 50323136 ~ 50323774 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G1124 NA non-coding CI01000000 null 1631727 ~ 1693643 (-)