G111049


Basic Information

Item Value
gene id G111049
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 2153800 ~ 2156087 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU126188
GGGCCCTTGCTCTCATCCCAGGTGAGCAGTCTTATGTAGGCAGTATTTAGCACCAGCGTGGGCCCTGGTAAGGGATTGCTGCTTTGCCCAGAATCACTGCTCTTCTTTGCTGGTGGCATGACTTGAGTGGCCTCCTCTATTGAAGATCTGATCCACTCAGTTGTGTGGTCCAAAGCACCTGGGGGAATTAAAATGATATCCAAGGTTAAGGGCCCAGATGTGCAAAAAAGGTCCAGACACTTTTGGGTGAACTATCACTTTAAATTAACATTCTGCCATCATTTACTCATGTCTTTCTTCTGTAGAACACAGAAAGACGACATTGTGATTTAATCCATACAATGAAAGTTTGTGAAAATGAAGAAAGTGAAAATTACATGAAATGTAAGGTTAGATCTAGTACAGCTTTTCAATTGGGTTTTTCAGTTTTCAGTGGGTCCTACTGACTTTTATTGTACACTGTAAAAAATGATTAATTTTAACTGTAAAAATGGCTAACAGTAAGTTCAGTAATACATTAAGAATATACAGAGAAAAACTGTACTAGATCTAACCTTACATTTCATGTAATTTTACAGTAAAATACTGCAAAATGTACAATTTTTGGAAGTAAAAAGAACATATAAACTTATAATTTACAGTGAACAAAACATAATTATAAAACGGATAGTTCCGGCCCTTGATTCTGATTGGTTGAGCCACGTTCGAAGCCGTTGTAAAATTCCCGAAAACATATAGCTGACCGCATTACATAATATCGCTGCGCCTGCGTCACTGAATGTGTATGTTGCTAGAAACCACTCTCAGCAACGTAAACATATGTATGCTTACTGCATTATGTAGAAAAGGATCTTGTCCTTTTAACATTTAATGGGTTTTCCCTGCCCTGCTGACACTCACAGCGCTAGTCAAAGCATTTATCATTTGCATCTTGTTCCATGTTCACAACAAGTTTCAATATAAAAGTCTTTGCGACTGAGTGCCTCGCTCATAAAGATGGTCTTTGCCGCCATCTAATGGCGTAATAAATGTGACTTCTGTTGCTGTTTATGGTCAGGGACTGTTTTTTTCCAGCGGAAGGAAGCCTTTTAAAGATTTTACTTCATGAAAGTTGCATTGATAGATATTTTTTGGCTTTAATATTTGTATTGTGTGGTAACCATTTTATAAATGCAATAAGCCCCGTGAAGCCGTGGTTTACAGTGTATTTATAACAGCTAAGGGGGTTTTCATGCTTAACAACGCCCCTTAGCTGTTATAAATTCACTGTAAACCACGGCTTCTTGGGGCTTATCCGCTTAAGTCGTGATGTAAGGAACGCTGTTTCTGGGTCCAAGCCTCGACTCGTTTCACTTGAGAATCCTATCTCAACAGCCGTTTATGAGCGCTATTTATTCATATTAAACATTTAACATTTTAAAAAGTTAAACATTTAAAATACTTACAGTCTACACAACCGTCTCCATGCTCACAGCGTCACAAACATTAATATTTTAACATTTCTAAAAGATGAATCACTGTCTGGCCATCTGGGATTTTGGTATGGAGATAAAGGTTATGATTATAATTTTTTGGTAGTATTACACCACATCGTGTGTGTATATTAGCACCGTTTGTTGTTTTCTTGTGGTATGAGAGTGCGTTTGGACCCAGAAGCGCTGCCGTGTAACAATCAAATTGCTTTAATTTACATTCCCACAATTCCCATTAACGCTTCACATTTGATGGTTTTTAACTTTGATAATTATGCTTCTTAGTTTTAACTTATCAGTTATGTAAATTAGGATTTTATGTTCTATCTTATGTTGGATATACTGGTTTAAAGGGTAAAATTTAAAATTGTAAAATTTACAAGTTGTTCTGTAAATATGTTTACATTTTTACTGTATTTTCTTTACAGAATTATTCTGGCAATAACAGCAGCCAGTTTTATTCTGTAAAAAATACTTTTTTTTTTTTTCTTCTTTTTTTTTTACAGTATATGGACAAAAACAGTCTTCAAAAAAATCTTATGTTTCACAGAAGAAAGTCAAATGAGATTGGAATGACATGAGGGTGAGTGAATGATGACAGAACTTTCTCTTTTTGGATGAACTATCCATTAAAATAAATTTCATCTCAATGTTTGTTTGTGGACTTACTGGGAGTTCTTTCCAGAATGCTCTGGAATTTGGCTCTCTCATACTCTACCGACTGTCTCTGAAGCTCTGGCCTGAGGCTCTGGATAGTAAAATTCACCATGTCCATTTTCATCAGGTCCAGCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126188 True 2266 lncRNA 0.36 2 2153800 2156087

Neighbor

gene id symbol gene type direction distance location
CI01000020_02124037_02139813 GYS2 coding upstream 13970 2123158 ~ 2139830 (+)
CI01000020_02113206_02120765 LDHBB, LDHBA, LDHB coding upstream 32595 2113164 ~ 2121205 (+)
CI01000020_02105070_02110245 SLC25A3, SLC25A3A, SLC25A3B coding upstream 43481 2104226 ~ 2110319 (+)
CI01000020_02083977_02102990 TMPOA coding upstream 50318 2083977 ~ 2103482 (+)
CI01000020_02079089_02081777 STRAP.L, STRAP coding upstream 71950 2079089 ~ 2081850 (+)
CI01000020_02179764_02185141 NA coding downstream 23332 2179419 ~ 2185166 (+)
CI01000020_02199397_02227367 DENND5B coding downstream 42827 2198914 ~ 2227529 (+)
CI01000020_02233314_02238917 FAM60A coding downstream 77227 2233314 ~ 2239889 (+)
CI01000020_02243585_02253875 CAPRIN2 coding downstream 87498 2243585 ~ 2254571 (+)
CI01000020_02292816_02297112 BTG1 coding downstream 136272 2292359 ~ 2297830 (+)
G111044 NA non-coding upstream 83039 2064054 ~ 2070761 (+)
G111084 NA non-coding upstream 128885 2024670 ~ 2024915 (+)
G111028 NA non-coding upstream 377316 1775994 ~ 1776484 (+)
G110967 NA non-coding upstream 428678 1715495 ~ 1725122 (+)
G110989 NA non-coding upstream 483944 1669440 ~ 1669856 (+)
G111038 NA non-coding downstream 72543 2228630 ~ 2229561 (+)
G111141 NA non-coding downstream 169181 2325268 ~ 2325492 (+)
G111144 NA non-coding downstream 173198 2329285 ~ 2329506 (+)
G111160 NA non-coding downstream 218993 2375080 ~ 2376491 (+)
G111164 NA non-coding downstream 250144 2406231 ~ 2406463 (+)
CI01000020_01375811_01378288 AVPR2L other upstream 775451 1373164 ~ 1379068 (+)
CI01000020_01083614_01106789 PLXNC1 other upstream 1067027 1083230 ~ 1107257 (+)
CI01000020_00810993_00815495 CDPF1 other upstream 1337290 810899 ~ 816510 (+)
G110589 NA other upstream 1926952 180778 ~ 226848 (+)
G110562 NA other upstream 2105760 30693 ~ 48040 (+)
CI01000020_02444149_02444833 NA other downstream 288157 2443278 ~ 2444944 (+)
G111183 NA other downstream 491424 2647511 ~ 2658913 (+)
G112679 NA other downstream 1145084 3301171 ~ 3303730 (+)
G112753 NA other downstream 1558294 3714381 ~ 3733586 (+)
G113050 NA other downstream 2270571 4426658 ~ 4439762 (+)

Expression


Co-expression Network