Gene
RNA
| Item | Value |
|---|---|
| gene id | G111038 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000020 |
| NCBI id | null |
| chromosome length | 7209782 |
| location | 2228630 ~ 2229561 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU126177 | True | 932 | lncRNA | 0.34 | 1 | 2228630 | 2229561 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000020_02199397_02227367 | DENND5B | coding | upstream | 1101 | 2198914 ~ 2227529 (+) |
| CI01000020_02179764_02185141 | NA | coding | upstream | 43464 | 2179419 ~ 2185166 (+) |
| CI01000020_02124037_02139813 | GYS2 | coding | upstream | 88800 | 2123158 ~ 2139830 (+) |
| CI01000020_02113206_02120765 | LDHBB, LDHBA, LDHB | coding | upstream | 107425 | 2113164 ~ 2121205 (+) |
| CI01000020_02105070_02110245 | SLC25A3, SLC25A3A, SLC25A3B | coding | upstream | 118311 | 2104226 ~ 2110319 (+) |
| CI01000020_02233314_02238917 | FAM60A | coding | downstream | 3753 | 2233314 ~ 2239889 (+) |
| CI01000020_02243585_02253875 | CAPRIN2 | coding | downstream | 14024 | 2243585 ~ 2254571 (+) |
| CI01000020_02292816_02297112 | BTG1 | coding | downstream | 62798 | 2292359 ~ 2297830 (+) |
| CI01000020_02351020_02353651 | NA | coding | downstream | 121459 | 2351020 ~ 2354384 (+) |
| CI01000020_02386014_02399244 | DCN, PGS2 | coding | downstream | 156231 | 2385792 ~ 2399354 (+) |
| G111049 | NA | non-coding | upstream | 72543 | 2153800 ~ 2156087 (+) |
| G111044 | NA | non-coding | upstream | 157869 | 2064054 ~ 2070761 (+) |
| G111084 | NA | non-coding | upstream | 203715 | 2024670 ~ 2024915 (+) |
| G111028 | NA | non-coding | upstream | 452146 | 1775994 ~ 1776484 (+) |
| G110967 | NA | non-coding | upstream | 503508 | 1715495 ~ 1725122 (+) |
| G111141 | NA | non-coding | downstream | 95707 | 2325268 ~ 2325492 (+) |
| G111144 | NA | non-coding | downstream | 99724 | 2329285 ~ 2329506 (+) |
| G111160 | NA | non-coding | downstream | 145519 | 2375080 ~ 2376491 (+) |
| G111164 | NA | non-coding | downstream | 176670 | 2406231 ~ 2406463 (+) |
| G111185 | NA | non-coding | downstream | 290486 | 2520047 ~ 2521338 (+) |
| CI01000020_01375811_01378288 | AVPR2L | other | upstream | 850281 | 1373164 ~ 1379068 (+) |
| CI01000020_01083614_01106789 | PLXNC1 | other | upstream | 1141857 | 1083230 ~ 1107257 (+) |
| CI01000020_00810993_00815495 | CDPF1 | other | upstream | 1412120 | 810899 ~ 816510 (+) |
| G110589 | NA | other | upstream | 2001782 | 180778 ~ 226848 (+) |
| G110562 | NA | other | upstream | 2180590 | 30693 ~ 48040 (+) |
| CI01000020_02444149_02444833 | NA | other | downstream | 214683 | 2443278 ~ 2444944 (+) |
| G111183 | NA | other | downstream | 417950 | 2647511 ~ 2658913 (+) |
| G112679 | NA | other | downstream | 1071610 | 3301171 ~ 3303730 (+) |
| G112753 | NA | other | downstream | 1484820 | 3714381 ~ 3733586 (+) |
| G113050 | NA | other | downstream | 2197097 | 4426658 ~ 4439762 (+) |
