Gene
RNA
| Item | Value |
|---|---|
| gene id | G111185 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000020 |
| NCBI id | null |
| chromosome length | 7209782 |
| location | 2520047 ~ 2521338 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU126336 | True | 1292 | lncRNA | 0.36 | 1 | 2520047 | 2521338 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000020_02444149_02444833 | NA | coding | upstream | 75103 | 2443278 ~ 2444944 (+) |
| CI01000020_02430803_02438850 | NA | coding | upstream | 80535 | 2430232 ~ 2439512 (+) |
| CI01000020_02416674_02427648 | KERA | coding | upstream | 92169 | 2413935 ~ 2427878 (+) |
| CI01000020_02411139_02412253 | LUM | coding | upstream | 106874 | 2410468 ~ 2413173 (+) |
| CI01000020_02386014_02399244 | DCN, PGS2 | coding | upstream | 120693 | 2385792 ~ 2399354 (+) |
| CI01000020_02569281_02578301 | ATP2B3, ATP2B4, ATP2B1B | coding | downstream | 47275 | 2568613 ~ 2578841 (+) |
| CI01000020_02627995_02631513 | NA | coding | downstream | 106657 | 2627995 ~ 2631870 (+) |
| CI01000020_02633932_02637797 | MEST | coding | downstream | 112594 | 2633932 ~ 2638006 (+) |
| CI01000020_02865197_02919405 | CHCHD3, CHCHD3A | coding | downstream | 343859 | 2865197 ~ 2919405 (+) |
| CI01000020_02983105_03176041 | PLXNA4 | coding | downstream | 461767 | 2983105 ~ 3176041 (+) |
| G111164 | NA | non-coding | upstream | 113584 | 2406231 ~ 2406463 (+) |
| G111160 | NA | non-coding | upstream | 143556 | 2375080 ~ 2376491 (+) |
| G111144 | NA | non-coding | upstream | 190541 | 2329285 ~ 2329506 (+) |
| G111141 | NA | non-coding | upstream | 194555 | 2325268 ~ 2325492 (+) |
| G111038 | NA | non-coding | upstream | 290486 | 2228630 ~ 2229561 (+) |
| G111212 | NA | non-coding | downstream | 100037 | 2621375 ~ 2621629 (+) |
| G111175 | NA | non-coding | downstream | 101015 | 2622353 ~ 2626680 (+) |
| G111216 | NA | non-coding | downstream | 125670 | 2647008 ~ 2647283 (+) |
| G111224 | NA | non-coding | downstream | 182742 | 2704080 ~ 2716598 (+) |
| G111225 | NA | non-coding | downstream | 184654 | 2705992 ~ 2746048 (+) |
| CI01000020_01375811_01378288 | AVPR2L | other | upstream | 1141698 | 1373164 ~ 1379068 (+) |
| CI01000020_01083614_01106789 | PLXNC1 | other | upstream | 1433274 | 1083230 ~ 1107257 (+) |
| CI01000020_00810993_00815495 | CDPF1 | other | upstream | 1703537 | 810899 ~ 816510 (+) |
| G110589 | NA | other | upstream | 2293199 | 180778 ~ 226848 (+) |
| G111183 | NA | other | downstream | 126173 | 2647511 ~ 2658913 (+) |
| G112679 | NA | other | downstream | 779833 | 3301171 ~ 3303730 (+) |
| G112753 | NA | other | downstream | 1193043 | 3714381 ~ 3733586 (+) |
| G113050 | NA | other | downstream | 1905320 | 4426658 ~ 4439762 (+) |
| CI01000020_04760482_04774849 | NA | other | downstream | 2238674 | 4760012 ~ 4776083 (+) |
