G111245


Basic Information

Item Value
gene id G111245
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 2796035 ~ 2830200 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU126410
GGGGTAGGTGGCCTTCATTGGCACTCACGGGAGAATGAAGGAGAAGAGACGGGAAGAGAAAAAATAACCTTCCCCCTCTGTGCAATTCAGAAGGGAAAACAATCAGACCGTGCTTTTGTACACTTGACCGGTAGGCAAATGCTGTTTGAACAGTTAGTCTAATAAACGGATCGACTAATGAAAGGGAAGAAGAGCTGGAAGAAGCAAGGATGAAAAACAAGGGTGTATTATCTTTCTATATTGTATATGCGAGTGTGTGTGTGCTTACTGTATAAAAGAAAACAAAAAAAGATACCTGTAGAACAGGTCTTTGAACTCCCAGGTTTTTCATAGTGTCAGCACTGGCCAGGATCTTGAGCGGGTCGGACACCTTGGTCACAGCCTCAATCTCCTTATTGGTCTCGGTGCGGACCTGGCTGAGGAACAGGTCATTGATGTAGTAGGTGAGGAAGGTGCGTAGCTGACATTGCTTGGCCTGAGCAGGACCCATACGGGACTCGATCTCCTGAATGAATCTAAGCAATGGCTGAAAGATGACCGTGATGTTTCTGGCTCCCGGTTTACACAGGAATTTAGTCTCTCCTCCCTCAATCAGGTTATCGTCAGCTCCACCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU126410 True 614 lncRNA 0.47 2 2796035 2830200

Neighbor

gene id symbol gene type direction distance location
CI01000020_02633932_02637797 MEST coding upstream 158029 2633932 ~ 2638006 (+)
CI01000020_02627995_02631513 NA coding upstream 164165 2627995 ~ 2631870 (+)
CI01000020_02569281_02578301 ATP2B3, ATP2B4, ATP2B1B coding upstream 217194 2568613 ~ 2578841 (+)
CI01000020_02514166_02557008 NA coding upstream 238496 2514105 ~ 2557539 (+)
CI01000020_02444149_02444833 NA coding upstream 351091 2443278 ~ 2444944 (+)
CI01000020_02865197_02919405 CHCHD3, CHCHD3A coding downstream 34997 2865197 ~ 2919405 (+)
CI01000020_02983105_03176041 PLXNA4 coding downstream 152905 2983105 ~ 3176041 (+)
CI01000020_03189213_03235363 NA coding downstream 357905 3188105 ~ 3235432 (+)
CI01000020_03264878_03271412 NRF1 coding downstream 433917 3264117 ~ 3272069 (+)
CI01000020_03343617_03348546 KLHDC10 coding downstream 513417 3343617 ~ 3348555 (+)
G111225 NA non-coding upstream 49987 2705992 ~ 2746048 (+)
G111224 NA non-coding upstream 79437 2704080 ~ 2716598 (+)
G111216 NA non-coding upstream 148752 2647008 ~ 2647283 (+)
G111175 NA non-coding upstream 169355 2622353 ~ 2626680 (+)
G111212 NA non-coding upstream 174406 2621375 ~ 2621629 (+)
G111324 NA non-coding downstream 101101 2931301 ~ 2931690 (+)
G111326 NA non-coding downstream 106971 2937171 ~ 2937377 (+)
G111331 NA non-coding downstream 130659 2960859 ~ 2961067 (+)
G111288 NA non-coding downstream 173180 3003380 ~ 3014892 (+)
G111287 NA non-coding downstream 199727 3029927 ~ 3067810 (+)
G111183 NA other upstream 137122 2647511 ~ 2658913 (+)
CI01000020_01375811_01378288 AVPR2L other upstream 1417686 1373164 ~ 1379068 (+)
CI01000020_01083614_01106789 PLXNC1 other upstream 1709262 1083230 ~ 1107257 (+)
CI01000020_00810993_00815495 CDPF1 other upstream 1979525 810899 ~ 816510 (+)
G112679 NA other downstream 470971 3301171 ~ 3303730 (+)
G112753 NA other downstream 884181 3714381 ~ 3733586 (+)
G113050 NA other downstream 1596458 4426658 ~ 4439762 (+)
CI01000020_04760482_04774849 NA other downstream 1929812 4760012 ~ 4776083 (+)
CI01000020_04807118_04808453 NA other downstream 1976827 4806765 ~ 4809414 (+)

Expression


Co-expression Network