G113162


Basic Information

Item Value
gene id G113162
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 3204773 ~ 3205005 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU128562
CTCGATACACCACAAAGACTCGCTCTCCTGGTCACAGATGAGCCAGCCGAGACACACACCAACAATTTGTCCTCTTTTGAACTCTGATATGTCTCCCATTATGTTGTGTGGATTGCAATATTTTATGTACAGCTGTGCTATTGCTGTGCTAATTCAACCTTCACACTCTGCTCTTACTGATGTAATGTAAAATTAGTGAAGATTGGCCACCAGGCCACGCACATATAGGCGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128562 True 233 lncRNA 0.44 1 3204773 3205005

Neighbor

gene id symbol gene type direction distance location
CI01000020_02924213_02955174 NA coding downstream 249558 2923453 ~ 2955215 (-)
CI01000020_02828968_02849511 NA coding downstream 355262 2828763 ~ 2849518 (-)
CI01000020_02756005_02810495 EXOC4 coding downstream 394075 2755777 ~ 2810698 (-)
CI01000020_02732766_02753514 NA coding downstream 451259 2732696 ~ 2753514 (-)
CI01000020_02673393_02705226 COL7A1L coding downstream 498831 2673393 ~ 2705942 (-)
CI01000020_03272487_03278811 NA coding upstream 67438 3272443 ~ 3279198 (-)
CI01000020_03282336_03296954 NA coding upstream 77271 3282276 ~ 3297250 (-)
CI01000020_03304491_03309596 UBE2H coding upstream 99414 3300912 ~ 3310248 (-)
CI01000020_03335308_03338805 ZC3HC1 coding upstream 129967 3334972 ~ 3339019 (-)
CI01000020_03350468_03358669 CAX1 coding upstream 145448 3350453 ~ 3358669 (-)
G113139 NA non-coding downstream 1484 3202959 ~ 3203289 (-)
G113138 NA non-coding downstream 4133 3200289 ~ 3200640 (-)
G112645 NA non-coding downstream 24322 3180139 ~ 3180451 (-)
G112644 NA non-coding downstream 25579 3175676 ~ 3179194 (-)
G112601 NA non-coding downstream 61540 3131679 ~ 3143233 (-)
G113174 NA non-coding upstream 20235 3225240 ~ 3225552 (-)
G113160 NA non-coding upstream 186824 3391829 ~ 3445455 (-)
G113231 NA non-coding upstream 247615 3452620 ~ 3452938 (-)
G113249 NA non-coding upstream 267542 3472547 ~ 3472806 (-)
CI01000020_02121873_02122329 KISS2 other downstream 1082399 2121714 ~ 2122619 (-)
G112136 NA other downstream 1083541 2040034 ~ 2121232 (-)
CI01000020_01463785_01480876 GNPTAB other downstream 1719795 1463771 ~ 1481058 (-)
G111774 NA other downstream 2230132 973608 ~ 974641 (-)
G113375 NA other upstream 556440 3761445 ~ 3847924 (-)
G113802 NA other upstream 1539514 4744519 ~ 4746050 (-)
G114747 NA other upstream 2319601 5524606 ~ 5525234 (-)
CI01000020_05958448_05959900 NA other upstream 2753446 5958221 ~ 5960015 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G226418 NA non-coding NW_019170605.1 APWO02000203.1 277719 ~ 277961 (+)