G112659


Basic Information

Item Value
gene id G112659
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 3209440 ~ 3209712 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU128003
CAGATTTTTTATTATGAACATAGGACTGACATGAAGGAAAATGCTAAATCTGAATGCAGGTAATAAACTCGCTCACTCAATCTCTTTCTCACAACACTCTTCTACATAATACAGTAAGCTTCAATGAACAATATCAATTGAGAACATACAGTTTATGTTGCTAAGAGTGGTTGCTAAGGGTGTTGTGCAGTGATACACAGAACCGTTGGGTGAAGCGGTCATAGCCGTGTTTTATCGTGAATAAAACACAGCTATTGACCAATCAGAATCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128003 True 273 lncRNA 0.37 1 3209440 3209712

Neighbor

gene id symbol gene type direction distance location
CI01000020_02983105_03176041 PLXNA4 coding upstream 33399 2983105 ~ 3176041 (+)
CI01000020_02865197_02919405 CHCHD3, CHCHD3A coding upstream 290035 2865197 ~ 2919405 (+)
CI01000020_02633932_02637797 MEST coding upstream 571434 2633932 ~ 2638006 (+)
CI01000020_02627995_02631513 NA coding upstream 577570 2627995 ~ 2631870 (+)
CI01000020_02569281_02578301 ATP2B3, ATP2B4, ATP2B1B coding upstream 630599 2568613 ~ 2578841 (+)
CI01000020_03264878_03271412 NRF1 coding downstream 54405 3264117 ~ 3272069 (+)
CI01000020_03343617_03348546 KLHDC10 coding downstream 133905 3343617 ~ 3348555 (+)
CI01000020_03379393_03391963 SLC26A5 coding downstream 169681 3379393 ~ 3393102 (+)
CI01000020_03397866_03404516 PRDM4 coding downstream 188154 3397866 ~ 3404710 (+)
CI01000020_03405045_03408250 AKR1B1 coding downstream 195333 3405045 ~ 3408273 (+)
CI01000020_03189213_03235363 NA non-coding upstream 10602 3188105 ~ 3235432 (+)
G111287 NA non-coding upstream 141630 3029927 ~ 3067810 (+)
G111288 NA non-coding upstream 194548 3003380 ~ 3014892 (+)
G111331 NA non-coding upstream 248373 2960859 ~ 2961067 (+)
G111326 NA non-coding upstream 272063 2937171 ~ 2937377 (+)
G112699 NA non-coding downstream 52750 3262462 ~ 3262672 (+)
G112702 NA non-coding downstream 74989 3284701 ~ 3284907 (+)
G112687 NA non-coding downstream 94093 3303805 ~ 3304620 (+)
G112716 NA non-coding downstream 113111 3322823 ~ 3325360 (+)
G112681 NA non-coding downstream 127857 3337569 ~ 3338192 (+)
G111183 NA other upstream 550527 2647511 ~ 2658913 (+)
CI01000020_02444149_02444833 NA other upstream 759633 2443278 ~ 2444944 (+)
CI01000020_01375811_01378288 AVPR2L other upstream 1831091 1373164 ~ 1379068 (+)
CI01000020_01083614_01106789 PLXNC1 other upstream 2122667 1083230 ~ 1107257 (+)
CI01000020_00810993_00815495 CDPF1 other upstream 2392930 810899 ~ 816510 (+)
G112679 NA other downstream 91459 3301171 ~ 3303730 (+)
G112753 NA other downstream 504669 3714381 ~ 3733586 (+)
G113050 NA other downstream 1216946 4426658 ~ 4439762 (+)
CI01000020_04760482_04774849 NA other downstream 1550300 4760012 ~ 4776083 (+)
CI01000020_04807118_04808453 NA other downstream 1597315 4806765 ~ 4809414 (+)

Expression


Co-expression Network