G112687


Basic Information

Item Value
gene id G112687
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 3303805 ~ 3304620 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU128034
AGCGTTTCTATATTAAAACAGCTGTCGAAACAAATGAGAAAAAAAAACAAAAAAAAAAAACAGGACAACCAGGGAAGCAATGATAATTCAAAATGACTTGCGCTGGGATGACCGAACAGGATCGATCAAACTGCTGAGGTGGAAGGAAGTAATGAGGCAAAACGTGTCCGATCCAACTGCAACAACTCCACCTGAAGACCGTCCTTGCAAAAGGTCTAAGCTGAGGGGATTCATATATCAGAGCATCACGGACACAACTCTGCACGTTAGTAACATCACAAGGGCACCCCCCGGTTAAATACAGCCTCTGTCCGGTCAGTCTGCGTCAGAAAAGGTGGATTAGGGAGGCGATGACATGCATTCCAGCTACGCAGCTACCGACGTGGAATCAAGGGGGAGACACTACAAGCCTTTCTTTTGTTGGGGTGTCGGAGAGAGCGATTGAGAGAGCGAAAGAGAGAAAAAAAAGGGGGGAAAAACAACCACCAAGAAGTAGAGATAGAACACCTAGAGAGTGTGCCGTATTCATCGTCAACGCTAGATATCCATAAAAATCCTGGTTTAGTAATAATAACGATAAAAAAAAAAAAATCACCTTGTTTAAATATGAATCTTTTATAGTCTGCTTCGCATGGTTAGGAAATAATATAGTCTCTGTGGTAAAGGGGAGAAACTGTCGCCCTTAACTACAACTCCATGTCCTGAGCTTCGTCCTCTGAAAAGTCAGACATGGAGCTTTCTGATGAGGAGTCGCCCGCTCCTTCCTCCTGCTCCTTCAGAGCCTCCTCTGTTGCATATTTCTGGATGTATTCTGAA

Function

NR:

description
PREDICTED: serine/threonine-protein kinase ULK4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128034 True 816 lncRNA 0.44 1 3303805 3304620

Neighbor

gene id symbol gene type direction distance location
CI01000020_03264878_03271412 NRF1 coding upstream 31736 3264117 ~ 3272069 (+)
CI01000020_03189213_03235363 NA coding upstream 68373 3188105 ~ 3235432 (+)
CI01000020_02983105_03176041 PLXNA4 coding upstream 127764 2983105 ~ 3176041 (+)
CI01000020_02865197_02919405 CHCHD3, CHCHD3A coding upstream 384400 2865197 ~ 2919405 (+)
CI01000020_02633932_02637797 MEST coding upstream 665799 2633932 ~ 2638006 (+)
CI01000020_03343617_03348546 KLHDC10 coding downstream 38997 3343617 ~ 3348555 (+)
CI01000020_03379393_03391963 SLC26A5 coding downstream 74773 3379393 ~ 3393102 (+)
CI01000020_03397866_03404516 PRDM4 coding downstream 93246 3397866 ~ 3404710 (+)
CI01000020_03405045_03408250 AKR1B1 coding downstream 100425 3405045 ~ 3408273 (+)
CI01000020_03623678_03625344 NA coding downstream 318914 3623534 ~ 3626024 (+)
G112702 NA non-coding upstream 18898 3284701 ~ 3284907 (+)
G112699 NA non-coding upstream 41133 3262462 ~ 3262672 (+)
G112659 NA non-coding upstream 94093 3209440 ~ 3209712 (+)
G111287 NA non-coding upstream 235995 3029927 ~ 3067810 (+)
G112716 NA non-coding downstream 18203 3322823 ~ 3325360 (+)
G112681 NA non-coding downstream 32949 3337569 ~ 3338192 (+)
G112779 NA non-coding downstream 179408 3484028 ~ 3484228 (+)
G112782 NA non-coding downstream 181751 3486371 ~ 3486626 (+)
G112785 NA non-coding downstream 188157 3492777 ~ 3493087 (+)
G112679 NA other upstream 75 3301171 ~ 3303730 (+)
G111183 NA other upstream 644892 2647511 ~ 2658913 (+)
CI01000020_02444149_02444833 NA other upstream 853998 2443278 ~ 2444944 (+)
CI01000020_01375811_01378288 AVPR2L other upstream 1925456 1373164 ~ 1379068 (+)
CI01000020_01083614_01106789 PLXNC1 other upstream 2217032 1083230 ~ 1107257 (+)
G112753 NA other downstream 409761 3714381 ~ 3733586 (+)
G113050 NA other downstream 1122038 4426658 ~ 4439762 (+)
CI01000020_04760482_04774849 NA other downstream 1455392 4760012 ~ 4776083 (+)
CI01000020_04807118_04808453 NA other downstream 1502407 4806765 ~ 4809414 (+)
CI01000020_05267250_05267668 MRPS33 other downstream 1962417 5267250 ~ 5268673 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_027222 ube2h coding NC_007115.7 CM002888.2 15011341 ~ 15059876 (+)
eurasian perch (Perca fluviatilis) G227499 NA non-coding NC_053134.1 CM020931.1 12987713 ~ 13043018 (+)
bowfin (Amia calva) AMCG00006540 ube2h,LOC105888480,LOC107676921 coding CM030134.1 CM030134.1 8026690 ~ 8034832 (+)
mexican tetra (Astyanax mexicanus) G227159 NA non-coding NW_019170638.1 APWO02000236.1 26258 ~ 31287 (-)