G112768


Basic Information

Item Value
gene id G112768
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 3555249 ~ 3555949 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU128123
TGTTCTCACTCATTCTTTGCAAAGTCTTGTAAGTGTCACACTGCAAAAGTTTTCTATTCTCACTATACCATGAATAGCGACAGTAAAGATACTGATAAGAGACAAGCACTCCAAAAAGGGACGAAACACACACCTTGTTCGTCCTGTCAATCTCTGTTGAGTTATCCAGATATTCCACAATCCCAGAGATGCAGAGTGGCCCAGCGAAGCCCAGCAGGTCGGCCATGTACCGGAAGGTGCTGCTGAGGAGGATTGGCCCCCCAAAAGCCCGGTACATGGATTTCCAGATGGATGGGGATTTTTCTGGGTCTTCTGTATTCTGCTGTCAAAATTGGACAAGCAAAGAGGAATCCTTCAGACGCAGATAGTTGGTCAAGGCCCTCATCGCGATAGGAAGTTTGCCAATCTTCTTCAGCTCAATGGGTCTCTTATGGGCTCCAATAATGAGCGGATTCATCCACCAATATGTTGCCTTGGAGAGGAGGTTGACGAAGGGCTGGAGGAATCGGACGCCCAAGTCCTGCAAGTCTTCTGGGGGCTTCACCCTCTGGGGGGTCGCAAAGAACACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128123 True 569 lncRNA 0.49 2 3555249 3555949

Neighbor

gene id symbol gene type direction distance location
CI01000020_03405045_03408250 AKR1B1 coding upstream 146976 3405045 ~ 3408273 (+)
CI01000020_03397866_03404516 PRDM4 coding upstream 150539 3397866 ~ 3404710 (+)
CI01000020_03379393_03391963 SLC26A5 coding upstream 162147 3379393 ~ 3393102 (+)
CI01000020_03343617_03348546 KLHDC10 coding upstream 206694 3343617 ~ 3348555 (+)
CI01000020_03264878_03271412 NRF1 coding upstream 283180 3264117 ~ 3272069 (+)
CI01000020_03623678_03625344 NA coding downstream 67585 3623534 ~ 3626024 (+)
CI01000020_03632947_03634207 NA coding downstream 76998 3632947 ~ 3634278 (+)
CI01000020_03660304_03682653 PLXNB2A coding downstream 104355 3660304 ~ 3683035 (+)
CI01000020_03761716_03806609 NELL2B coding downstream 205767 3761716 ~ 3806914 (+)
CI01000020_03840431_03846507 TWF1, TWF1B coding downstream 283653 3839602 ~ 3847229 (+)
G112766 NA non-coding upstream 38744 3516132 ~ 3516505 (+)
G112790 NA non-coding upstream 56025 3498805 ~ 3499224 (+)
G112789 NA non-coding upstream 57917 3497075 ~ 3497332 (+)
G112788 NA non-coding upstream 58858 3496182 ~ 3496391 (+)
G112786 NA non-coding upstream 60285 3494249 ~ 3494964 (+)
G112760 NA non-coding downstream 133507 3689456 ~ 3696142 (+)
G112769 NA non-coding downstream 140636 3696585 ~ 3697508 (+)
G112806 NA non-coding downstream 157283 3713232 ~ 3713845 (+)
G112819 NA non-coding downstream 190433 3746382 ~ 3746615 (+)
G112827 NA non-coding downstream 201912 3757861 ~ 3758199 (+)
G112679 NA other upstream 251519 3301171 ~ 3303730 (+)
G111183 NA other upstream 896336 2647511 ~ 2658913 (+)
CI01000020_02444149_02444833 NA other upstream 1105442 2443278 ~ 2444944 (+)
CI01000020_01375811_01378288 AVPR2L other upstream 2176900 1373164 ~ 1379068 (+)
CI01000020_01083614_01106789 PLXNC1 other upstream 2468476 1083230 ~ 1107257 (+)
G112753 NA other downstream 158432 3714381 ~ 3733586 (+)
G113050 NA other downstream 870709 4426658 ~ 4439762 (+)
CI01000020_04760482_04774849 NA other downstream 1204063 4760012 ~ 4776083 (+)
CI01000020_04807118_04808453 NA other downstream 1251078 4806765 ~ 4809414 (+)
CI01000020_05267250_05267668 MRPS33 other downstream 1711088 5267250 ~ 5268673 (+)

Expression


Co-expression Network