XLOC_008191 (ppp2r2ca)


Basic Information

Item Value
gene id XLOC_008191
gene name ppp2r2ca
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 52522717 ~ 52552875 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015935
CAGCAGCTCCTCCAACGGACCCCTGCGCGGCAGAGATGGAGCCGCGGGCCGCCTGCTGATGCCCGGCCGCAGGATGGAGCCCCGCCCGCCCCGCAGCGCCACCGCCCGGCCGCAGTATGGAGGATTCCCGCAACACCAGCGGATTCCTGCGGGACCACAACTACTCCACCGAAGCTGATATCATCTCTACTGTGGAGTTCAACCCCAGCGGAGAGCTGCTGGCCACCGGAGACAAAGGAGGACGAGTGGTGGTCTTCCAGAGAGAGCAGGAGAGCAAGAACCAGCCTCACAGACGGGGAGAGTATAATGTTTACAGCACGTTTCAGAGTCACGAGCCGGAGTTTGACTATCTGAAGAGTTTAGAAATCGAGGAGAAGATCAATAAGATTCGCTGGCTTCCTCAGCAGAACGCCGCCTACTTCCTGCTGTCCACCAACGATAAAACTGTGAAACTGTGGAAGATCAGTGAGAGAGACAAGCGGCCCGAGGGATATAATCTGAAGGATGAGGACGGAAGAGTCCGAGATCCGGCCACTATCACCACATTACGGGTGCCGGTGCTGCAGCCGATGGATCTGATGGTGGAGGCTTCAGCGCGAAGGGTTTTCTGCAACGCACACGCATACCACATCAACTCCATCTCCATCAACAGCGACGGCCAGACCTTCATGTCCACCGATGACCTGCGAATCAACCTGTGGAACCTGGAGGTCACAGACAGCAGCTTCAACATGGTGGACATGAAGCCGGTGAATATGGAGGATCTGACGGAGGTGATCACGAACGCAGAGTTCCACCCCCAGCACTGCAACACCTTCGCCTACAGCAGCAGTAAAGGCTCCATACGCCTGTGTGACATGAGGGACGCGGCGCTCTGCGACAAACACTCCAAATTTTTCGAGGAGCCAGAAGACCCAAGCAATCGCTCGTTTTTCTCGGAAATCATCTCCTCCATCTCTGATGTAAAGTTCAGCCACAGCGGCCGCTACCTGATGACCCGCGACTACCTGACGGTGAAGGTGTGGGATCTGAATATGGAGAGCAAACCGCTGGAGACGTACCAGGTGCATGATTACCTGAGAGGTAAACTCTGCTCGCTGTACGAGAACGACTGCATCTTCGACAAGTTTGAGTGTGTTTGGAACGGATCCGACAGCGTGATCATGACTGGTTCCTACAACAACTTCTTCCGAATGTTCGACCGCAACACGAAGCGTGATGTGACTCTGGAGGCGTCGCGGGAGAACAGCAAACCCCGCGCCGTACTGAAGCCGCGCAGAGTGTGTGTGGGAGGAAAACGCCGCAAAGACGAGATCAGTGTGGACAGCCTGGACTTCAGCAAGAAGATCCTGCACACCGGCTGGCATCCGTACGAGAACATCATCGCAGTGGCGGCCACCAATAACCTCTACATCTTCCAGGACAAGATCAACTAGCACAGGAGATGATGAGGAGCTAACTCTGCGTTAATCTTCCATGAACTCctatttatttatactatttattacGGTCTTCACTGAAGGGAAATGCTTGAGTCTTTAAAGGGTTCGTTCACCAAAAATGgataattctgtcatcaattactctCCCTCATGACAATTCAGTCCTCCAAATCCTtcatttatcttcagaacacaagaCATTTTAGATGAAATGTAAAAGCTCTCTTATCCTGTTTCCATACACATCATTTTACGCACATTCTGAaatgttgttgtgctgattgtaaaGGCCTCAGTCAGTCCGTCATCACAGTGCCTCAGTATTCTTCTtctattattccctccagaactgtcttgagcatctcgtcaccttagaattacaaGGTTCTCTCTGagattttgtcaaaattgagttattcacatactcttattaaatgacaacttatttacattatgggatgttttttataagttgtttacattttaggagttttttgtttttgaacaaATATCACACACGTACTGTtagctatggaatgcaaaaactgtgAAGCTCGATGTCTcgaaatcattcagaacgcagagagaaccttaaaattccaaggtgacgatctGTCTGCGCTCCCGTCTCATGCCTCCAGGAGCCTCCACACTCACCGTGTTGATTGCGTTTGGTCTTGGTGTTCTGACTCATTTATTAGAGGAGAACAGCACAGTGGAGAATCCCCTCAGTGCAGCAGCCTCCACTCCTCTCCTGTGCTGGAGCTGATGCTCTACTGTGATGGAGATGCTGATTTACTCACTACTGATTTATGACATAttacagttttgcacataaatccaAGTcatatctttggatggaaacacatcTGTAGACAATCCTGAGAGCCTCAAACTCCAGACAAGACCAAAAACATTGAGTGTTGTCTTAAGATCAAACTAGTATGCCTGTCTTTTGTCTCTTTCCTGCAGGcgcaggacatcaacatgatgtcatattgacgttgtaccccagtgTTGTGgagattttgtttggaaattaaaatcagGTTGGcttcagaacccaacgtcaatgtccaaccaaatatcaacgtctaatcatggtACATGTTACACGTTGTTTgtacattaccactatgacatctattagatgttggattttggttactttccaacacaacctaaaataaaccaaatgtaAACGTCATTTGACATCGATATTGGACGTCCGAATAACGTTGTCCTTTAAAGACATTAAagtttggtcacctgacgtcatgatctaaatctaacctaatatttacCTCTTATGATGCTGGGTTATAATGGAGTGTGTTTCCATGTTTGTGTGTATACAGCTAATTCTAATGCCAATACATTGTTCTGTTATGTAcagtaaacacaaacacacaccttgaCCTCACGAGGGAAAGAAGATATAAGTAGGCCCATACGgaatcagcagatttttagcccatcattaattctgtttatttacttgagtaaatatgcgtaaatctatatttattcagtttttaaataattacagtaatattattgacaaatatgaaaatgttcatctgatttatgtacagtgcagtgtgtacagtaatattttccgTCTttcagtagagatattatatgagacttgatttgtttaccaaataaagtgaatctaattgatttgcattgtaaagattaattaaaagttaaaaaagatatcattttttatttcatatattagggttttagttatgaaactcccaaaatcattccgcataagtccacagatttttaccataattctcagcagaaatagcaaaaaacatccgctcATTCCGTCTGGCCATAGATATAAGCAGAATGAGTATTTTTGCACACAGAAGGGTTGTAGGAGCTTGTTATAATTACAGCTGAACCACTGCAGACACACAAAATGTTTAGACAATGTTTTGTTCCTGGTCATCTCGGGGCTCTTGCTGTCTTTGGcggatgagagagctccaggatttcatctaaaacatcttcatttgtgttctggaGATGAACGAAGCTCTCAGAGGATTGAAAGAAGATGAGGGAGAGCAATTAACAACAGAATGATCTTTTTTGTGTGAACCAACCCTTTAAATCTGGACAAATGTGAAGTTTCACTGCAGTGATGTAAAGAATTATAAGCTGTGAACAGAACGGCTGATACTCTGGCATAAGAGACAAAGGGGTgccttcacaaacacacactggatTCGATCCCCTTTGAAACACAGCTACGAATGTGACTCTGATTCACGTTTCTGGAGTCAGTCCTGCTGGTCCAGTTTGGTCATTTCATGTCGTCCTTTTCTTTGTTAATAAGCTGTGTGCCTTCTTTTGGTATGTGGGTGCTCGGGCGGGAGGGTTTTTGATGGTGGTGTTTGGGTTGTGATGTGTGAATGTTTTTACAAGATAGCTTTGTGTGAGAAGTGGGATAAGAAAAGCTAAATTGTGGTTTTTCAGTACACAGAATTGAAGTACTTGAATTTAAGTCTCCACTGTGTGCTCATAACTTTACAGTTTAGCCattgtgtttagttttttgcGCATTCTCCAGTGCTGTGCTGGGTGCAAAGTATTACTGCATGCAACAACTCACATGATCAGATCTCACTTGTTTTCCACTGTCTGAGACTGTTAAACTTCACAGTTGTGTCATATTGGCCTGAGGGTGACAGGAGCGCCGGTATCATGATGTAGCCTAACATGATGTGAAGGTTCAGTGGTATCAGGGAATTTTATTATGTACAAATGAAGCTGTAATGTTCTCTTCTGAAGAGGAAATCAACCTTCAGTTGTAAACTTCTTAATAAATCAAAGTTTTATAGTGC
>TCONS_00015936
ATGCATCTCTTTGAGGAGGAGAACAGGCGATTTCTGAGAgCTGATATCATCTCTACTGTGGAGTTCAACCCCAGCGGAGAGCTGCTGGCCACCGGAGACAAAGGAGGACGAGTGGTGGTCTTCCAGAGAGAGCAGGAGAGCAAGAACCAGCCTCACAGACGGGGAGAGTATAATGTTTACAGCACGTTTCAGAGTCACGAGCCGGAGTTTGACTATCTGAAGAGTTTAGAAATCGAGGAGAAGATCAATAAGATTCGCTGGCTTCCTCAGCAGAACGCCGCCTACTTCCTGCTGTCCACCAACGATAAAACTGTGAAACTGTGGAAGATCAGTGAGAGAGACAAGCGGCCCGAGGGATATAATCTGAAGGATGAGGACGGAAGAGTCCGAGATCCGGCCACTATCACCACATTACGGGTGCCGGTGCTGCAGCCGATGGATCTGATGGTGGAGGCTTCAGCGCGAAGGGTTTTCTGCAACGCACACGCATACCACATCAACTCCATCTCCATCAACAGCGACGGCCAGACCTTCATGTCCACCGATGACCTGCGAATCAACCTGTGGAACCTGGAGGTCACAGACAGCAGCTTCAACATGGTGGACATGAAGCCGGTGAATATGGAGGATCTGACGGAGGTGATCACGAACGCAGAGTTCCACCCCCAGCACTGCAACACCTTCGCCTACAGCAGCAGTAAAGGCTCCATACGCCTGTGTGACATGAGGGACGCGGCGCTCTGCGACAAACACTCCAAATTTTTCGAGGAGCCAGAAGACCCAAGCAATCGCTCGTTTTTCTCGGAAATCATCTCCTCCATCTCTGATGTAAAGTTCAGCCACAGCGGCCGCTACCTGATGACCCGCGACTACCTGACGGTGAAGGTGTGGGATCTGAATATGGAGAGCAAACCGCTGGAGACGTACCAGGTGCATGATTACCTGAGAGGTAAACTCTGCTCGCTGTACGAGAACGACTGCATCTTCGACAAGTTTGAGTGTGTTTGGAACGGATCCGACAGCGTGATCATGACTGGTTCCTACAACAACTTCTTCCGAATGTTCGACCGCAACACGAAGCGTGATGTGACTCTGGAGGCGTCGCGGGAGAACAGCAAACCCCGCGCCGTACTGAAGCCGCGCAGAGTGTGTGTGGGAGGAAAACGCCGCAAAGACGAGATCAGTGTGGACAGCCTGGACTTCAGCAAGAAGATCCTGCACACCGGCTGGCATCCGTACGAGAACATCATCGCAGTGGCGGCCACCAATAACCTCTACATCTTCCAGGACAAGATCAACTAG

Function

symbol description
ppp2r2ca Predicted to enable protein phosphatase regulator activity. Predicted to be involved in peptidyl-serine dephosphorylation. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol. Orthologous to human PPP2R2C (protein phosphatase 2 regulatory subunit Bgamma).

GO:

id name namespace
GO:0070262 peptidyl-serine dephosphorylation biological_process
GO:0005829 cytosol cellular_component
GO:0000159 protein phosphatase type 2A complex cellular_component
GO:0019888 protein phosphatase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051120-168 Predicted to enable protein phosphatase regulator activity. Predicted to be involved in peptidyl-serine dephosphorylation. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol. Orthologous to human PPP2R2C (protein phosphatase 2 regulatory subunit Bgamma).

Ensembl:

ensembl_id ENSDARG00000100093

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015935 False 4306 mRNA 0.44 9 52522717 52552875
TCONS_00015936 True 1302 mRNA 0.53 9 52525587 52542928

Neighbor

gene id symbol gene type direction distance location
XLOC_008190 GPR151 coding downstream 1257 52520204 ~ 52521460 (-)
XLOC_008189 exosc3 coding downstream 42056 52476520 ~ 52480661 (-)
XLOC_008188 rest coding downstream 89425 52418247 ~ 52433292 (-)
XLOC_008187 polr2b coding downstream 113900 52377557 ~ 52408817 (-)
XLOC_008186 NA coding downstream 331025 52189877 ~ 52191692 (-)
XLOC_008192 CU469526.1 coding upstream 20601 52573476 ~ 52583021 (-)
XLOC_007641 CU855896.1 misc downstream 50114877 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 50115286 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 50115645 2406945 ~ 2407072 (-)
XLOC_008185 CABZ01075745.1 non-coding downstream 473443 52049158 ~ 52049274 (-)
XLOC_008184 NA non-coding downstream 619079 51903159 ~ 51903638 (-)
XLOC_008182 NA non-coding downstream 685330 51826078 ~ 51837387 (-)
XLOC_008181 CABZ01066915.1 non-coding downstream 769520 51753080 ~ 51753197 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00011198 LOC105011263,LOC107750325,LOC107677389,LOC107587064 coding CM030133.1 CM030133.1 13752553 ~ 13778757 (-)