Gene
RNA
| Item | Value |
|---|---|
| gene id | G113382 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000020 |
| NCBI id | null |
| chromosome length | 7209782 |
| location | 3805725 ~ 3810257 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU128807 | True | 1297 | lncRNA | 0.42 | 2 | 3805725 | 3810257 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000020_03747339_03750711 | PRL2 | coding | downstream | 54661 | 3746966 ~ 3751064 (-) |
| CI01000020_03732545_03743107 | NUAK1, NUAK1A | coding | downstream | 62618 | 3732135 ~ 3743107 (-) |
| CI01000020_03694932_03711432 | NA | coding | downstream | 93906 | 3694660 ~ 3711819 (-) |
| CI01000020_03635237_03635771 | NA | coding | downstream | 169954 | 3634582 ~ 3635771 (-) |
| CI01000020_03627542_03627865 | NA | coding | downstream | 175227 | 3627492 ~ 3630498 (-) |
| CI01000020_03967766_03983729 | PPHLN1 | coding | upstream | 157297 | 3967554 ~ 3983729 (-) |
| CI01000020_04028318_04041538 | PDZRN4 | coding | upstream | 217241 | 4027498 ~ 4041538 (-) |
| CI01000020_04089784_04102212 | CNTN1, CNTN1B | coding | upstream | 279312 | 4089569 ~ 4102212 (-) |
| CI01000020_04105843_04123658 | NRCAMA | coding | upstream | 295465 | 4105722 ~ 4123658 (-) |
| CI01000020_04163168_04174402 | PNPLA8 | coding | upstream | 351975 | 4162232 ~ 4174677 (-) |
| G113372 | NA | non-coding | downstream | 47526 | 3757860 ~ 3758199 (-) |
| G113357 | NA | non-coding | downstream | 101604 | 3703848 ~ 3704121 (-) |
| G113356 | NA | non-coding | downstream | 102459 | 3702979 ~ 3703266 (-) |
| G113354 | NA | non-coding | downstream | 104157 | 3701117 ~ 3701568 (-) |
| G113351 | NA | non-coding | downstream | 117036 | 3688434 ~ 3688689 (-) |
| G113522 | NA | non-coding | upstream | 399137 | 4209394 ~ 4209718 (-) |
| G113525 | NA | non-coding | upstream | 400183 | 4210440 ~ 4210658 (-) |
| G113550 | NA | non-coding | upstream | 462460 | 4272717 ~ 4272920 (-) |
| G113581 | NA | non-coding | upstream | 570768 | 4381025 ~ 4381293 (-) |
| G113612 | NA | non-coding | upstream | 608878 | 4419135 ~ 4467635 (-) |
| CI01000020_03304491_03309596 | UBE2H | other | downstream | 471163 | 3300912 ~ 3310248 (-) |
| CI01000020_02828968_02849511 | NA | other | downstream | 956207 | 2828763 ~ 2849518 (-) |
| CI01000020_02121873_02122329 | KISS2 | other | downstream | 1683351 | 2121714 ~ 2122619 (-) |
| G112136 | NA | other | downstream | 1684493 | 2040034 ~ 2121232 (-) |
| CI01000020_01463785_01480876 | GNPTAB | other | downstream | 2320747 | 1463771 ~ 1481058 (-) |
| G113802 | NA | other | upstream | 934262 | 4744519 ~ 4746050 (-) |
| G114747 | NA | other | upstream | 1714349 | 5524606 ~ 5525234 (-) |
| CI01000020_05958448_05959900 | NA | other | upstream | 2148194 | 5958221 ~ 5960015 (-) |
| G114926 | NA | other | upstream | 2349053 | 6159310 ~ 6162609 (-) |
