XLOC_008192 (CU469526.1)


Basic Information

Item Value
gene id XLOC_008192
gene name CU469526.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 52573476 ~ 52583021 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015937
ATGCTCGAGTTCTGGACTGTGTATGTTGATATTCCCGCGGTGATGATGGCAGATGAGCTCTTACATCTGTGTGATGTGGACAGTCTGAGTGCAGACATGCAGAAGAGAGAACAGCAGGAGTTTACAGCGAGCAGGAGGATTTACAGCCGAGCGAGGAGGAGGGTGTTCGCTCAGTTCGTGGCATCGAAGCAGGCTCCTGCGTCCAGCGGCTCGGGGTGTGTGTGGCTCTgctgcggacacacacacactgatcccgCTTCCATACACAGACACGCGTCCAGCAGCCACAGCGCAGAGATCCACCAGCTGACCAGCGACTCACTGAAGCTTCAGAAGACTCACGGCGACTCACTGAATCATCAGACTCTCAGCGACTCAGTGAATCATCAGACTCTCAGCGACTCAGTGAATCATCAAAACACTGACGGTGACTCGGCGAGTGTGTGTGCTGCAGCAGGAGTGTGTGTTGCTGGATCAGCAGACGTGTCCTCCTGGATGCCAGACATGAGCCACGTCTCAGAACATGAGCTGAGCAGcggtGAGGGTGTGGTGCTGCTCTTCTACTGCTACTGTCTCCTCCCGGACCCGCAGCTCATCTCCCGCTGGCAgcagcagctctgcacaacaCTGCGCCTCACAGGCAAGGTTCGAGTGGCGACCGAAGGAATAAATGGTACAGTGGGCGGAACCGCAACCGGCGCTGAGCTCTACATACAGACGATGCTCCGACATCCAGCGTTCAGCAGCATGCAGACGGAGGACTTCaagagaagTGCCGGTGGTGCGCAGTGTTTCTCCGGCCTGAAGGTTGGTGTACACCGAGAGATCGTGCCGATGGGTGTGGATCCAGAGCTCGTCTCCTACAGATCCGCCGGGATCCACCTGGAGCCGCAGGAGTTCCACCGGGAGGTGCAGGCGCTGGTGGAGAGCCCGGAGCTGCAGGCCGACACCATACTGCTGGACTGCAGGAACTTCTACGAGAGCAAAATTGGTCAGTTCAGCTGCTGTGTGGCTCCAGATATCCGCAAGTTCAGCTACTTCCCTGATTACGTGGACCAGAACCTGGATCTGTTTCGGGACAAGAGGGTTCTGATGTACTGCACCGGCGGCATCCGCTGCGAACGCGGCTCTGCGTACCTGCGCTCCAAGcgcgTCTGTAAGGAGGTGTACCAGCTGAAGGGAGGTGTTCATAAGTACCTGGAGCAGTTCCCTGACGGATTCTACCGCGGTAAACTCTTCGTGTTCGACGAGCGCTACGCCATCGCCTACAACCAGGACGTCATCTCAGTGTGTCGGTACTGCTCTCAGCCGTGGGATCAGTACGTGCGCTGCTCTACAGGTGTGTGTGGTCAGCTGCTGCTGTCGTGTGTGTCCTGCCGTGTGTGGTCTGACCGCCTGCTGTGAAGAGTGTCAGGAGTCCAGCCGAGAGCAGTGCCAGTGCACCCGGAGCCGGCCGcgcatacccacacacacacacacacacactgctcagaaCAGTcaataaatcacacacacacacacacacactgctcagaaCAGTCAgtagatctcacacacacacacacacacacgcacacacacacacactgctcagaaCAGTCAGTAGATCAACaatcatgacacacacacacacacacacacacacacacacacacacactgctcagaaCACTCAAATCAACAatcatgatacacacacactcaataaaTGTGCAGTCATGATCCTCCGTCTGTTTATTTCTCAATTAAAGCACACATTTACATATAAATCAACACTTTGATcagctgcgcacacacacacacacacacacacacacacgttaaagGCGCAGTACACCCAGAAATGAGCActcctccatcatcatcatctcctCACAGTTGTGTtgaacacacatgcagacacactgCTGAACGGCTGATCGTGCTGTAGACGCTGGTGTGTTCAGCAGAAGCTCATGATGGATCAGACACAGCTGAGTGAGCGGTGTTCAACAGAGTGTGCGCTGCGCCTTTAATCAGACAATATTCCTGAAGCTCAGATCATATAaatacagaacacacacacacacacacacacacacacacacacagaggcacaCGCAGGCGTCTGGAGAGAATCAGCTGGGGATCAGGCCGGAGGCTCCTGATCAGCTCCTTTGGCAGATATACAGGCTTCAGCACCTGCAACACAGACCCCGCTGTTACTGGACCATCCTCCAGCGCTCAACATGTTACACAAGCAGATCTGTCAGATTAATGCCAGTGCTGCGGTGCTGAGGCCGTGTCCACACTCATACTCCACACCGAGACGCGCGTCAGGACAGGAAAGCCTCTCGTTGTAAGCACTGTCCAAGGGGGATTAAGGTGTGGTGTTCAGGGTGGGAAACCATGACCGTTTCAGTCATGTGACTGATCCAGCTGACATGCTGGAGGAcactgtgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggtgtgtgtgtgtatggcctCTGTTCAGCGCTCAGGCAGTGTTTGCTGGAGCTGTTGTTCAgatcagagcacacacacacacacacacacacacacactgtttgagAGAGTCGGTCAGCAGCAGTGGGCATGAGCAGGTGAAGCGTCTGCGTCTGTGTGCTGCTCCGTGCATCAACCAGAGGCCTTCAGTGTGGGTGATGGAGAGACGTGAAGAGCAGAGTGTGGACACGAGCACTCGCAGACCAGCACAGCGGGCAGATGTGTGTGCATTAGTGTAGACGCAGCCGGAGTACAGTTTATTACAATAAAGAGACATTAAACACCAGGAATAATGcacagaagaagaagagaaacaactttactattgatttaaaaaataaaataatcaatgtttaaaaataatcccAAAATATCCACAATCAAAACATaagaaaacagtcaaaatattacAGGAAAAGAGTCGAGATATTATGAGAATGAAGCCGCAGTAATGAGATTATGTTTGCAATATTTGAGTTTATTCTCTAATATATCCACTCATTCTAACATTTCTacttttcctataatattttgctTTATTCGATCACTACGGCTTAATTCTCTGAACATAAACATTTGGAgaataaaattaagttaactttaatcACATATTAAGACTTTATTCTCTATATATTATGACTTTAATCCAGTTCTCGTAGACCTGTTAGCATGTCGCTAATACCCCATGATGGAAATAAAACAGGAAGCTCTTCCACACTTCACAGAGGTGTAAATGAAATGTCTGAATATTGACGGCTCATTCAGAATACTGTAGAGGATGCTGACAGTGAAGACGTGACGGACTCTACACTGATCCTGAGTCAGTTCTGAAATGCACACATCTGCATGAGCCTGACTCTGCTGCCTGTGCCcatcagtgatgatgatgatgatgatgatgatgagggttAGGGGCTGATGTGCTGAGCTCTACACTCCTAATATGCACCGTTTGATGGATTGATTTTGTCGTCTTTCTCTCTGATCACTCCATCATCTTTCCTTCATCAGTATCTTGATGCAGTCTCTACATGTACATGGTTTGTTTTCTTCTAATTAATTcacaagtaaaataataataagctgTGTGTCTAATAAACTGACGCTTCATCTGATTTggctgctggactgctccatgatcaGGAGTGGAGTGAAGGCACACgatgtaataattacattaacattatattgaCCATCCTCATAGAAGATTTACCACAGCGCCAACATCAGTGCCACAGTAAACCAATAAAAACCAAAGATTGCATGATTAAAGTTGTAATACTTCAGGCGTCAAGTCAAAATGAGAGACAAGAATAAAGTAAAAATACTGTGAGAAGTTGTAGTGATGTGAGATTAAAGTTGCAGTGATGCAagaataaaatcaaaatattcaGAGAAAATAGTTGAAATATGAGAATAATGTTGAAATGCTACAAAAATAaagtagaaattctgtgaaaataCTGCACAAATGAAGAcgaaaataaacttaaaatattacgaaaataaagttgaaatattGAGAGAATAAAGTCGAAATATGAGAATAATGTTGAAATATTAGAAAgtctaaatattataaaaatattacaaaaagtaaatattacaaaaagttGTAGTAATACAAGGATAAagtcaaaataatacaaaaacttgaaatattataaagtaaatactacaaaaataaagtttaaatattataaaaatgttatgaaaatactaatattacattaaaagtaGTAAAACAAGGA
>TCONS_00016534
gtgtgtgtgtgtgtgtTGTGTCGGTACTGCTCTCAGCCGTGGGATCAGTACGTGCGCTGCTCTACAGGTGTGTGTGGTCAGCTGCTGCTGTCGTGTGTGTCCTGCCGTGTGTGGTCTGACCGCCTGCTGTGAAGAGTGTCAGGAGTCCAGCCGAGAGCAGTGCCAGTGCACCCGGAGCCGGCCGcgcatacccacacacacacacacacacactgctcagaaCAGTcaataaatcacacacacacacacacacactgctcagaaCAGTCAgtagatctcacacacacacacacacacacgcacacacacacacactgctcagaaCAGTCAGTAGATCAACaatcatgacacacacacacacacacacacacacacacacacacacactgctcagaaCACTCAAATCAACAatcatgatacacacacactcaataaaTGTGCAGTCATGATCCTCCGTCTGTTTATTTCTCAATTAAAGCACACATTTACATATAAATCAACACTTTGATc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098660

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015937 False 4269 mRNA 0.46 9 52573476 52583021
TCONS_00016534 True 510 lncRNA 0.50 2 52575963 52576704

Neighbor

gene id symbol gene type direction distance location
XLOC_008191 ppp2r2ca coding downstream 20601 52522717 ~ 52552875 (-)
XLOC_008190 GPR151 coding downstream 52016 52520204 ~ 52521460 (-)
XLOC_008189 exosc3 coding downstream 92815 52476520 ~ 52480661 (-)
XLOC_008188 rest coding downstream 140184 52418247 ~ 52433292 (-)
XLOC_008187 polr2b coding downstream 164659 52377557 ~ 52408817 (-)
XLOC_007641 CU855896.1 misc downstream 50165636 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 50166045 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 50166404 2406945 ~ 2407072 (-)
XLOC_008186 NA non-coding downstream 381784 52189877 ~ 52191692 (-)
XLOC_008185 CABZ01075745.1 non-coding downstream 524202 52049158 ~ 52049274 (-)
XLOC_008184 NA non-coding downstream 669838 51903159 ~ 51903638 (-)
XLOC_008182 NA non-coding downstream 736089 51826078 ~ 51837387 (-)
XLOC_008181 CABZ01066915.1 non-coding downstream 820279 51753080 ~ 51753197 (-)

Expression


Co-expression Network