G112928


Basic Information

Item Value
gene id G112928
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 4091205 ~ 4100700 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU128294
CGGGGTCTCCTGGTGAACATTTCACAGTGCTCACTGGGCGGTCCGAGCCCAGCTCCGTTGAACGCTCGTACCTCTATAAGGTAGTGAGAGTCAGGCCGCATGTTCTCCAGGCGTGTTTGGTTAATCATTCTATGCACAATGACTCGAGAGGCAGCAGCCTCATTATCATCGTACTTTCTCCAGTAACGAATCTGGTATCCGTCGACCCAGTTTGGCGGTGCCTGGTAGACCGGTAACCACCAGACCAAAGCTTCTGTAGAGGTGACCTGGCGGGCGTAGACGTCTAATGGAGCTTCAGTTGGTGCTTGGCGTGGCGAATATACCACTGATATAAGACTTGAGGGTCCTTCTCCTTTGTTGTTGTAGGTGCTCACTTTGACCTGTATTTCTGTGTCTGGGGTCATGCTCTCTTTGTAGACATACCGTCTCGTCTCAGGATCCTCCACGGTCATCCATTTCCACTCATAATCCTCATGCGGCTTGAATGCCACAACATAGCCAAATTTTTTACCAAAGAAGAACTGAGGTTTCACAGGAGTCCAGGTCACGATTAGCTCGCCACTTATTCCTACTTGACCGATGACGTCAGAAGGAGCTACTGTAGGCCTGGCATCCCATGTCTTGATTTTAATGGACGGACGGCTGCTTTCCCCAGCTCCAAATTCATTGATGGCATACACACGGAATTCATATTGCATCCAGGGGTAAAGGTCAAGAACGGTTGCTGACTCAGTAGATCCATCCAAAAACACAGGAGAAGTGGATGCAGTTTTCCAGTCCTCTGGATCCAGGGCGTAAAAGTCTCGTGTTTGTACAACATGCTGGATGAGGGGACTACCGTGGTCTGATCCCAGACACCATCGTAGTTTTGCTGACGTGTCTCCAATCTCTTCCACGCGGATGCCACCCGGAGGACCAGGCAAGCCTTTGACAAAAACATCAGCTTCTGCGGTGGCGTTGTCCACTATAGTCTGAGCTGTGCAGATATAGTGTCCTGCATGCCTTACCTGAATATTCTTGATCAGCAGGTCTCCACTGTGCTCATTACCCTGCAAAAACACACACAAACAATGAAAGTACACTGTAAAAAGT
>TU128295
CGGGGTCTCCTGGTGAACATTTCACAGTGCTCACTGGGCGGTCCGAGCCCAGCTCCGTTGAACGCTCGTACCTCTATAAGGTAGTGAGAGTCAGGCCGCATGTTCTCCAGGCGTGTTTGGTTAATCATTCTATGCACAATGACTCGAGAGGCAGCAGCCTCATTATCATCGTACTTTCTCCAGTAACGAATCTGGTATCCGTCGACCCAGTTTGGCGGTGCCTGGTAGACCGGTAACCACCAGACCAAAGCTTCTGTAGAGGTGACCTGGCGGGCGTAGACGTCTAATGGAGCTTCAGTTGGTGCTTGGCGTGGCGAATATACCACTGATATAAGACTTGAGGGTCCTTCTCCTTTGTTGTTGTAGGTGCTCACTTTGACCTGTATTTCTGTGTCTGGGGTCATGCTCTCTTTGTAGACATACCGTCTCGTCTCAGGATCCTCCACGGTCATCCATTTCCACTCATAATCCTCATGCGGCTTGAATGCCACAACATAGCCAAATTTTTTACCAAAGAAGAACTGAGGTTTCACAGGAGTCCAGGTCACGATTAGCTCGCCACTTATTCCTACTTGACCGATGACGTCAGAAGGAGCTACTGTAGGCCTGGCATCCCATGTCTTGATTTTAATGGACGGACGGCTGCTTTCCCCAGCTCCAAATTCATTGATGGCATACACACGGAATTCATATTGCATCCAGGGGTAAAGGTCAAGAACGGTTGCTGACTCAGTAGATCCATCCAAAAACACAGGAGAAGTGGATGCAGTTTTCCAGTCCTCTGGATCCAGGGCGTAAAAGTCTCGTGTTTGTACAACATGCTGGATGAGGGGACTACCGTGGTCTGATCCCAGACACCATCGTAGTTTTGCTGACGTGTCTCCAATCTCTTCCACGCGGATGCCACCCGGAGGACCAGGCAAGCCTTTGACAAAAACATCAGCTTCTGCGGTGGCGTTGTCCACTATAGTCTGAGCTGTGCAGATATAGTGTCCTGCATGCCTTACCTGAATATTCTTGATCAGCAGGTCTCCACTGTGCTCATTACCCATGAGCTGCTCGTAGTGTTCAAAGTCTGTGAAGAAGTTGATTTCGTAGGAATCGACAGTCCAGATGAAGGTGATGTCCAGGCTGGGGTCATATGATGCAGAGCACTGGAGAACTCTACTGTCACCTACAACCGCCTCAGTGTCTGATGGAGCCACGGTAATCTTGGTGGCCTCGGTGATAGTGAGGGTCCCTGTGCTGTTGGATTTGCCGCGGTCATTCTCAGCGTAGCAGGTGTACGAGCCCTCATCACTTTTTGTTGCATTCAGAATCTCCAGACTTCCATCATCCCAAATTAACATCCTTGAAGAGTTGGTCAGCAGCTCTGAGCCTCGTTTCCAGATGAACTTGGGTTTAGGAGCAGCACGGGGTTTGCACTCAATGACCACACGTCCATTTTCAGCCCCTAGCAGAACCTTCTTCACTGGATTATAAATGAATGTTGGTGCACAGGAGACGACCCGAAGCTCAGCGCTGGCATAGATGGTCCCCCATTCATTCTCAGCAATGCACTGATACATGCCTGAATCCTCAAACGTGAGGCTGGAGAACTTTAGCTCTCCTTTGCCGTATGAATAGCCATCCTTCAGCCAGCGTATCCATGGTTGGGGCTTCCCTACGGCGACACATCTGAGAGTGAGCTCGCTACCAACATCTTTCTCTGTGTCATTGATGTGCTCCGCCCACTCTGGAGCACCTTCCACATAGAGCCACTGTCGATACCAGTCCATCCCCTTAACATTGAGCGTTTCACACTCGTAGCTGCCCTCGTCCTCGTACTGAACATTAATCAGGTGCAGTAAAGCTCCATTCATGCTGACCTCATAGTTGGGTGGGAGATCAGCATCTAACTTCCTCCAGCGGATGTGTGGGAGCGGATTTCCAAGGGCAAAGCACTCCAGAGTGATGTTCTGTGCCACCAAAGCATAAGTCTTGGGAAATTTCACACGGATATCAGCAGGATACCGCTTCACCTCCTTTTCTATTTGTGGAATCAGAGAAATCGGCATGCTGAAAACACTCTTGCCGATGGTGGGACTTGACACAAAACAAGAATAATTCCCAACATCGGATGCCTCGACTTTGGCGATGTACAGATTCCCAGTGGTCTGAGACACGAAACGCCTCTGGTCTGGGATGATGAAGTTGGGGAAGTCGTTGTAGATCCAGCGGAACATCACTTCACTTGGATAGCGAGAGGGAGGAGAACACAGCAGGACGGCTCCCTGTCCCTCCTTAACATTCACCGGCTCTCTCTCATCTGTAGGGAACTGGTTCAGGTATCCAAATTTGACAGTGGCCTCTTTGCTGATGACGGTGCCGTAGACGTTCTTGGCCACACACACATATTTCCCAGCATGCTTGCTCTTATCTGGGTTGGTGATGACCAGGTTTCCTCCCACCAGGCTAAAGTGTTCATCAGGCTGTTCCATCAGTTTAATTTCCCAGTTGTTTAACCACCTTGATCATGGCCGGTGGGTTGGCCCGCACCCTGCAGTTCATGGAGATTTTGTTCTCTGGTGAATCCTCTGCGTACACGGTGTCTAGAGGCTCCTCCTCAAATATAGGGCCAAATCCTGTGGCCTCCTTGTCAAAAATTCTGGGTTCAAATATCCTTGGTTTAATTGCAGCGGCCGATAAGAAGAAGTAACAGAGAACACACAGAAGCATGGCTGGGGTCACCATCTTGACAATCTGACAGTTAAAAACCAGGCCTGAGGAAGAGGAATGGAAAATTAAAATGTGTGTGTGGATGAAGTGTTGCAGCTGCATTGTCTTGCTCTGATGTGGCAGGCCATAG
>TU128290
GAACTAACCCTTTAAGATATGTGTTTTGTCTCCCTCTAGTGGACTCACAAGTGGATGCAGTTTTCCAGTCCTCTGGATCCAGGGCGTAAAAGTCTCGTGTTTGTACAACATGCTGGATGAGGGGACTACCGTGGTCTGATCCCAGACACCATCGTAGTTTTGCTGACGTGTCTCCAATCTCTTCCACGCGGATGCCACCCGGAGGACCAGGCAAGCCTTTGACAAAAACATCAGCTTCTGCGGTGGCGTTGTCCACTATAGTCTGAGCTGTGCAGATATAGTGTCCTGCATGCCTTACCTGAATATTCTTGATCAGCAGGTCTCCACTGTGCTCATTACCCTGCAAAAACACACACAAACAATGAAAGTACACTGTAAAAAGT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU128294 False 1092 lncRNA 0.49 7 4091205 4094953
TU128295 False 2848 lncRNA 0.50 20 4091205 4100700
TU128290 True 383 lncRNA 0.48 2 4094336 4094953

Neighbor

gene id symbol gene type direction distance location
CI01000020_04005946_04011338 NA coding upstream 79722 4005739 ~ 4011483 (+)
CI01000020_03989813_04001907 YAF2 coding upstream 88383 3989813 ~ 4002822 (+)
CI01000020_03985890_03988606 ZCRB1 coding upstream 102269 3985890 ~ 3988936 (+)
CI01000020_03957225_03966342 PRICKLE1B, PRICKLE1 coding upstream 124263 3957225 ~ 3966942 (+)
CI01000020_03848839_03853256 PUS7L coding upstream 237575 3848839 ~ 3853630 (+)
CI01000020_04175433_04175851 AKAP14 coding downstream 74697 4175397 ~ 4175851 (+)
CI01000020_04186824_04192668 IRF5 coding downstream 85718 4186418 ~ 4192880 (+)
CI01000020_04213624_04215676 OPN1SW, OPN1SW1 coding downstream 112829 4213529 ~ 4216493 (+)
CI01000020_04226010_04238699 MDM1 coding downstream 124342 4225042 ~ 4238923 (+)
CI01000020_04240295_04242117 NA coding downstream 139491 4240191 ~ 4242373 (+)
G112919 NA non-coding upstream 18567 4072422 ~ 4072638 (+)
G112911 NA non-coding upstream 31037 4059901 ~ 4060168 (+)
G112897 NA non-coding upstream 39602 3993021 ~ 4051603 (+)
G112861 NA non-coding upstream 105830 3975871 ~ 3985375 (+)
G112848 NA non-coding upstream 232941 3857758 ~ 3858264 (+)
G112941 NA non-coding downstream 2605 4103305 ~ 4159120 (+)
G112955 NA non-coding downstream 34444 4135144 ~ 4136916 (+)
G112915 NA non-coding downstream 69945 4170645 ~ 4171529 (+)
G112980 NA non-coding downstream 108927 4209627 ~ 4210089 (+)
G112982 NA non-coding downstream 109966 4210666 ~ 4210901 (+)
G112753 NA other upstream 357619 3714381 ~ 3733586 (+)
G112679 NA other upstream 787475 3301171 ~ 3303730 (+)
G111183 NA other upstream 1432292 2647511 ~ 2658913 (+)
CI01000020_02444149_02444833 NA other upstream 1641398 2443278 ~ 2444944 (+)
CI01000020_01375811_01378288 AVPR2L other upstream 2712856 1373164 ~ 1379068 (+)
G113050 NA other downstream 325958 4426658 ~ 4439762 (+)
CI01000020_04760482_04774849 NA other downstream 659312 4760012 ~ 4776083 (+)
CI01000020_04807118_04808453 NA other downstream 706327 4806765 ~ 4809414 (+)
CI01000020_05267250_05267668 MRPS33 other downstream 1166337 5267250 ~ 5268673 (+)
G113929 NA other downstream 1522007 5622707 ~ 5625232 (+)

Expression


Co-expression Network