Gene
RNA
| Item | Value |
|---|---|
| gene id | G113057 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000020 |
| NCBI id | null |
| chromosome length | 7209782 |
| location | 4693855 ~ 4701724 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: protein FAM186A-like |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU128455 | True | 1400 | lncRNA | 0.41 | 2 | 4693855 | 4701724 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000020_04679937_04682501 | TMBIM4 | coding | upstream | 10773 | 4679835 ~ 4683082 (+) |
| CI01000020_04646413_04669776 | GRIP1 | coding | upstream | 23781 | 4646084 ~ 4670074 (+) |
| CI01000020_04593462_04636463 | NA | coding | upstream | 57383 | 4593462 ~ 4636472 (+) |
| CI01000020_04540238_04552388 | NA | coding | upstream | 141302 | 4539198 ~ 4552553 (+) |
| CI01000020_04496296_04500632 | NA | coding | upstream | 192816 | 4496121 ~ 4501039 (+) |
| CI01000020_04713721_04722425 | LEMD3 | coding | downstream | 11997 | 4713721 ~ 4723717 (+) |
| CI01000020_04733481_04740265 | MSRB3 | coding | downstream | 31757 | 4733481 ~ 4740265 (+) |
| CI01000020_04760482_04774849 | NA | coding | downstream | 58319 | 4760012 ~ 4776083 (+) |
| CI01000020_04807118_04808453 | NA | coding | downstream | 105041 | 4806765 ~ 4809414 (+) |
| CI01000020_04813284_04816943 | IRAK3 | coding | downstream | 111560 | 4813284 ~ 4817103 (+) |
| G113069 | NA | non-coding | upstream | 13183 | 4680289 ~ 4680672 (+) |
| G113060 | NA | non-coding | upstream | 102742 | 4585068 ~ 4591113 (+) |
| G113048 | NA | non-coding | upstream | 278650 | 4409512 ~ 4415205 (+) |
| G113067 | NA | non-coding | upstream | 285033 | 4403183 ~ 4408822 (+) |
| G113065 | NA | non-coding | upstream | 312542 | 4381021 ~ 4381313 (+) |
| G113088 | NA | non-coding | downstream | 104109 | 4805833 ~ 4806053 (+) |
| G113098 | NA | non-coding | downstream | 200368 | 4902092 ~ 4902684 (+) |
| G113099 | NA | non-coding | downstream | 201106 | 4902830 ~ 4903283 (+) |
| G113102 | NA | non-coding | downstream | 212297 | 4914021 ~ 4914271 (+) |
| G113058 | NA | non-coding | downstream | 238687 | 4940411 ~ 4943891 (+) |
| G113050 | NA | other | upstream | 254093 | 4426658 ~ 4439762 (+) |
| G112753 | NA | other | upstream | 960269 | 3714381 ~ 3733586 (+) |
| G112679 | NA | other | upstream | 1390125 | 3301171 ~ 3303730 (+) |
| G111183 | NA | other | upstream | 2034942 | 2647511 ~ 2658913 (+) |
| CI01000020_02444149_02444833 | NA | other | upstream | 2244048 | 2443278 ~ 2444944 (+) |
| CI01000020_05267250_05267668 | MRPS33 | other | downstream | 565313 | 5267250 ~ 5268673 (+) |
| G113929 | NA | other | downstream | 920983 | 5622707 ~ 5625232 (+) |
| G114094 | NA | other | downstream | 1101328 | 5803052 ~ 5805718 (+) |
