G113098


Basic Information

Item Value
gene id G113098
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 4902092 ~ 4902684 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU128497
TCTAAAGCCCTTTATAAAAAAAGGGAAAAACAATGATGTTGGACTATTTTGAAGTTGGAGGAGAAAATTAAATTTTAACCACAACAGTAGTGATTAGTAGTGATTTTTTTTTTTTCCACTCTAAAATCTTCATATTGTTTATATGTTTTGGCTATCCTATTAAAACCATGTATTTTAATGTTTACGGATTTGCCCTATTCACTTCCATTGTAAGTGCCTCAGTATAACACGTTATTGGTGTGAGTAAGGCCGTTTGAGCTTAACTTACATTGAACCTGCAATATTCCTTTAAACATCCTCAGGAGGGGTCGCAACAAGATCTGAGAGCCATTACCCTTTCCGTCATTGTTGAATATAATGAGCGAGCGCGAGGATACTTTGTAAACTGCTCCCTCCCTCCCTTGCATGCACTCCGGAAAACTTTTTTTATTTGTTATACATGGCAGTGTCAAGCAGGAAGGTGCAGCCATTCTTTGGACCAAGTATAAACAAGTAATATCCATTAATCGTGCTTGTTCGCCCTACTGAGGTACTTCCGCCTACGTCATACATGAGCTTTCCAAAGTGATTACGTAATGCATGGCGTATCGCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU128497 True 593 lncRNA 0.38 1 4902092 4902684

Neighbor

gene id symbol gene type direction distance location
CI01000020_04870746_04871405 MGST1.1, MGST1 coding upstream 30224 4870347 ~ 4871868 (+)
CI01000020_04868249_04868956 MGST1.2 coding upstream 33021 4867304 ~ 4869071 (+)
CI01000020_04837068_04844947 DERA coding upstream 56110 4837068 ~ 4845982 (+)
CI01000020_04827882_04835758 NA coding upstream 66073 4827251 ~ 4836019 (+)
CI01000020_04819543_04826613 NA coding upstream 75310 4819543 ~ 4826782 (+)
CI01000020_04926506_04934038 NA coding downstream 22871 4925555 ~ 4934242 (+)
CI01000020_05023157_05024184 NA coding downstream 120473 5023157 ~ 5024293 (+)
CI01000020_05038237_05069897 NA coding downstream 134455 5037139 ~ 5070313 (+)
CI01000020_05091059_05093805 RERGL, RERGLA coding downstream 188375 5091059 ~ 5094794 (+)
CI01000020_05108357_05112394 NA coding downstream 205595 5108279 ~ 5112552 (+)
G113088 NA non-coding upstream 96039 4805833 ~ 4806053 (+)
G113057 NA non-coding upstream 200368 4693855 ~ 4701724 (+)
G113069 NA non-coding upstream 221420 4680289 ~ 4680672 (+)
G113060 NA non-coding upstream 310979 4585068 ~ 4591113 (+)
G113048 NA non-coding upstream 486887 4409512 ~ 4415205 (+)
G113099 NA non-coding downstream 146 4902830 ~ 4903283 (+)
G113102 NA non-coding downstream 11337 4914021 ~ 4914271 (+)
G113058 NA non-coding downstream 37727 4940411 ~ 4943891 (+)
G113970 NA non-coding downstream 195458 5098142 ~ 5098363 (+)
CI01000020_04807118_04808453 NA other upstream 78306 4806765 ~ 4809414 (+)
CI01000020_04760482_04774849 NA other upstream 108831 4760012 ~ 4776083 (+)
G113050 NA other upstream 462330 4426658 ~ 4439762 (+)
G112753 NA other upstream 1168506 3714381 ~ 3733586 (+)
G112679 NA other upstream 1598362 3301171 ~ 3303730 (+)
CI01000020_05267250_05267668 MRPS33 other downstream 364353 5267250 ~ 5268673 (+)
G113929 NA other downstream 720023 5622707 ~ 5625232 (+)
G114094 NA other downstream 900368 5803052 ~ 5805718 (+)
CI01000020_05960777_05981596 NA other downstream 1077077 5960777 ~ 5982298 (+)
G114382 NA other downstream 1689540 6592224 ~ 6593564 (+)

Expression


Co-expression Network