Gene
RNA
| Item | Value |
|---|---|
| gene id | G113955 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000020 |
| NCBI id | null |
| chromosome length | 7209782 |
| location | 5294981 ~ 5299565 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU129446 | True | 1072 | lncRNA | 0.36 | 2 | 5294981 | 5299565 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000020_05269653_05286461 | BRAF | coding | upstream | 7607 | 5269653 ~ 5287374 (+) |
| CI01000020_05267250_05267668 | MRPS33 | coding | upstream | 27139 | 5267250 ~ 5268673 (+) |
| CI01000020_05143320_05161129 | CNOT4B | coding | upstream | 132222 | 5143173 ~ 5162759 (+) |
| CI01000020_05132989_05135436 | NA | coding | upstream | 159523 | 5132477 ~ 5135458 (+) |
| CI01000020_05108357_05112394 | NA | coding | upstream | 182429 | 5108279 ~ 5112552 (+) |
| CI01000020_05309535_05312719 | NA | coding | downstream | 9970 | 5309535 ~ 5313384 (+) |
| CI01000020_05341186_05473274 | BTBD11A, BTBD11B, BTBD11 | coding | downstream | 41621 | 5341186 ~ 5473274 (+) |
| CI01000020_05475873_05481460 | CYB5R3 | coding | downstream | 176308 | 5475873 ~ 5481460 (+) |
| CI01000020_05490931_05500137 | NA | coding | downstream | 191366 | 5490931 ~ 5500137 (+) |
| CI01000020_05514885_05515490 | NA | coding | downstream | 215320 | 5514885 ~ 5515695 (+) |
| G113975 | NA | non-coding | upstream | 94599 | 5179311 ~ 5200382 (+) |
| G113970 | NA | non-coding | upstream | 196618 | 5098142 ~ 5098363 (+) |
| CI01000020_05038237_05069897 | NA | non-coding | upstream | 238342 | 5037139 ~ 5070313 (+) |
| G113058 | NA | non-coding | upstream | 351090 | 4940411 ~ 4943891 (+) |
| G113102 | NA | non-coding | upstream | 380710 | 4914021 ~ 4914271 (+) |
| G113953 | NA | non-coding | downstream | 204399 | 5503964 ~ 5506516 (+) |
| G113932 | NA | non-coding | downstream | 266827 | 5566392 ~ 5622606 (+) |
| G113941 | NA | non-coding | downstream | 315738 | 5615303 ~ 5618949 (+) |
| G113924 | NA | non-coding | downstream | 326358 | 5625923 ~ 5627623 (+) |
| CI01000020_04807118_04808453 | NA | other | upstream | 471195 | 4806765 ~ 4809414 (+) |
| CI01000020_04760482_04774849 | NA | other | upstream | 501720 | 4760012 ~ 4776083 (+) |
| G113050 | NA | other | upstream | 855219 | 4426658 ~ 4439762 (+) |
| G112753 | NA | other | upstream | 1561395 | 3714381 ~ 3733586 (+) |
| G113929 | NA | other | downstream | 323142 | 5622707 ~ 5625232 (+) |
| G114094 | NA | other | downstream | 503487 | 5803052 ~ 5805718 (+) |
| CI01000020_05960777_05981596 | NA | other | downstream | 680196 | 5960777 ~ 5982298 (+) |
| G114382 | NA | other | downstream | 1292659 | 6592224 ~ 6593564 (+) |
| G114389 | NA | other | downstream | 1298781 | 6598346 ~ 6600180 (+) |
