Gene
RNA
| Item | Value |
|---|---|
| gene id | G113915 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000020 |
| NCBI id | null |
| chromosome length | 7209782 |
| location | 5715663 ~ 5717142 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU129404 | True | 1412 | lncRNA | 0.40 | 2 | 5715663 | 5717142 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000020_05651021_05656758 | NET1 | coding | upstream | 58759 | 5650779 ~ 5656904 (+) |
| CI01000020_05636849_05648400 | NA | coding | upstream | 67241 | 5635351 ~ 5648422 (+) |
| CI01000020_05569133_05573180 | NA | coding | upstream | 141856 | 5568383 ~ 5573807 (+) |
| CI01000020_05536783_05538245 | NA | coding | upstream | 177277 | 5536783 ~ 5538386 (+) |
| CI01000020_05514885_05515490 | NA | coding | upstream | 199968 | 5514885 ~ 5515695 (+) |
| CI01000020_05816151_05820574 | NA | coding | downstream | 98521 | 5815663 ~ 5820886 (+) |
| CI01000020_05941404_05941840 | NA | coding | downstream | 224262 | 5941404 ~ 5941885 (+) |
| CI01000020_05942995_05951650 | PRMT8B, PRMT8 | coding | downstream | 224784 | 5941926 ~ 5952403 (+) |
| CI01000020_05960777_05981596 | NA | coding | downstream | 243635 | 5960777 ~ 5982298 (+) |
| CI01000020_05988468_05989551 | NA | coding | downstream | 271109 | 5988251 ~ 5989553 (+) |
| G114070 | NA | non-coding | upstream | 4753 | 5710643 ~ 5710910 (+) |
| G114060 | NA | non-coding | upstream | 46806 | 5668649 ~ 5668857 (+) |
| G113924 | NA | non-coding | upstream | 88040 | 5625923 ~ 5627623 (+) |
| G113932 | NA | non-coding | upstream | 93057 | 5566392 ~ 5622606 (+) |
| G113941 | NA | non-coding | upstream | 96714 | 5615303 ~ 5618949 (+) |
| G114084 | NA | non-coding | downstream | 65915 | 5783057 ~ 5783281 (+) |
| G114085 | NA | non-coding | downstream | 66374 | 5783516 ~ 5783743 (+) |
| G114117 | NA | non-coding | downstream | 130411 | 5847553 ~ 5847781 (+) |
| G114127 | NA | non-coding | downstream | 178485 | 5895627 ~ 5895917 (+) |
| G114168 | NA | non-coding | downstream | 217370 | 5934512 ~ 5975712 (+) |
| G113929 | NA | other | upstream | 90431 | 5622707 ~ 5625232 (+) |
| CI01000020_05267250_05267668 | MRPS33 | other | upstream | 446990 | 5267250 ~ 5268673 (+) |
| CI01000020_04807118_04808453 | NA | other | upstream | 891877 | 4806765 ~ 4809414 (+) |
| CI01000020_04760482_04774849 | NA | other | upstream | 922402 | 4760012 ~ 4776083 (+) |
| G113050 | NA | other | upstream | 1275901 | 4426658 ~ 4439762 (+) |
| G114094 | NA | other | downstream | 85910 | 5803052 ~ 5805718 (+) |
| G114382 | NA | other | downstream | 875082 | 6592224 ~ 6593564 (+) |
| G114389 | NA | other | downstream | 881204 | 6598346 ~ 6600180 (+) |
| G114388 | NA | other | downstream | 907125 | 6617328 ~ 6644816 (+) |
