G114168


Basic Information

Item Value
gene id G114168
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 5934512 ~ 5975712 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU129668
TTTACTTTTGTTTTTANNNNNNNNNNNNNNNNATGTGGGGGAGGAGTCAAATAAAGAGGGAGGGGCCATATGACTCACTGACCACACCCACTGCCTCTGATCATCAAATCATATTACAGTTACTAGAGATACTGGGAGTTTCTTATGTTGCTACTAATGCATCAATGCCTTATGTTTTTATGCTATTTCAAATGTTTTTGTATGAAATGTTACATGCTTTACAAAATTTGCTTTAAAAAATAAATAAAAAATCAGTCTTCAGTATTTGGCCTATTATTTTTTTATACTGATATCAATGCATACTCAATGAATTTTTATGAACTTTATGAATGAATGAATTGTTAAAAGAGCATTTGGAAGATAGTTGACAAAAGAAAATGTGGAAAAAATATTTTAGGCGATTGACAGTATTTTAGGCAGTTGACAGCAATATCTAATGATGACAAAATTTTAAATAAGCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU129668 True 461 lncRNA 0.29 2 5934512 5975712

Neighbor

gene id symbol gene type direction distance location
CI01000020_05816151_05820574 NA coding upstream 113626 5815663 ~ 5820886 (+)
CI01000020_05651021_05656758 NET1 coding upstream 277608 5650779 ~ 5656904 (+)
CI01000020_05636849_05648400 NA coding upstream 286090 5635351 ~ 5648422 (+)
CI01000020_05569133_05573180 NA coding upstream 360705 5568383 ~ 5573807 (+)
CI01000020_05536783_05538245 NA coding upstream 396126 5536783 ~ 5538386 (+)
CI01000020_05988468_05989551 NA coding downstream 12539 5988251 ~ 5989553 (+)
CI01000020_06000788_06005009 NA coding downstream 25015 6000727 ~ 6005136 (+)
CI01000020_06035989_06042016 TMTC2A coding downstream 60277 6035989 ~ 6042020 (+)
CI01000020_06122192_06132967 PPFIBP1A coding downstream 146480 6122192 ~ 6133643 (+)
CI01000020_06272024_06286697 NA coding downstream 296312 6272024 ~ 6286956 (+)
G114127 NA non-coding upstream 38595 5895627 ~ 5895917 (+)
G114117 NA non-coding upstream 86731 5847553 ~ 5847781 (+)
G114085 NA non-coding upstream 150769 5783516 ~ 5783743 (+)
G114084 NA non-coding upstream 151231 5783057 ~ 5783281 (+)
G113915 NA non-coding upstream 217370 5715663 ~ 5717142 (+)
G114153 NA non-coding downstream 11679 5987391 ~ 5987951 (+)
G114151 NA non-coding downstream 37243 6012955 ~ 6013436 (+)
G114200 NA non-coding downstream 94392 6070104 ~ 6070316 (+)
G114216 NA non-coding downstream 120932 6096644 ~ 6096879 (+)
G114217 NA non-coding downstream 121779 6097491 ~ 6097716 (+)
G114094 NA other upstream 128794 5803052 ~ 5805718 (+)
G113929 NA other upstream 309280 5622707 ~ 5625232 (+)
CI01000020_05267250_05267668 MRPS33 other upstream 665839 5267250 ~ 5268673 (+)
CI01000020_04807118_04808453 NA other upstream 1110726 4806765 ~ 4809414 (+)
CI01000020_04760482_04774849 NA other upstream 1141251 4760012 ~ 4776083 (+)
CI01000020_05960777_05981596 NA other downstream 4049 5960777 ~ 5982298 (+)
G114382 NA other downstream 616512 6592224 ~ 6593564 (+)
G114389 NA other downstream 622634 6598346 ~ 6600180 (+)
G114388 NA other downstream 648555 6617328 ~ 6644816 (+)
CI01000020_06769551_06772924 NA other downstream 786175 6769310 ~ 6774074 (+)

Expression


Co-expression Network