G114230


Basic Information

Item Value
gene id G114230
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 6138651 ~ 6142560 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU129733
GATTGAGTGAAATGCCGTTGCAGATGACTTCTGTTGGAATGGTTCTACAATGACTGTTTGCTACAGCACTGCGCATTTTATGTCTCTCGCTGATCCAGTTCAGTTCATGCAGCTCTCTGAACACGTGTTGATGATCTGAATCGGATGACGAGGGAGACAAAAATGAGCAGTGCTGGAGAGGCCATAACGGAGGGGTGTTTTCGACCGCATTACCTGATTTGCTCACGTCACGGTGACGGTTGTGTTTAAGAGTGGGGTCAGAGACTCGCTGGACAAGGATAAAGAAATACAGGTTTGCAGGAGAACTGAATCATGGGAGGAGGTCCATGCACATGAGGATGAGTGTGTCATCTTCACTAAGTCCTCACTGATGAAGCCTTGTCTGTACTCATCCCTTCTTATCCCATCACCTTCTGATTGATTATTAATGTCTGGATGAACTTGAACAAGTCACCTAAACTAAGGTTGTTAATTTACCTAAATATAATCCGCAAAAACAAGAAGTTCTGGTGTCCTGTCGATGGTGTGCCACGTCTCAAAACGATTGGCCATGACCTCTTCTAACTCAAGGTGTTGGAGAATGTCTGTTTTAAGACACAAACATTTGTGAGTGGGAAAAATTCTTTGAAGCGCTCCACTCAACACATGCCGGAGACACCTGCTGGTCAAAATGTGTAAATGCAAGTAAGAACAGTCCAAACATGACACCTTTTGCAAATGTGTAATCTATTACATGTAATCTACAAATCATTAAATACATAAGCATCTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU129733 True 770 lncRNA 0.43 3 6138651 6142560

Neighbor

gene id symbol gene type direction distance location
CI01000020_06122192_06132967 PPFIBP1A coding upstream 5008 6122192 ~ 6133643 (+)
CI01000020_06035989_06042016 TMTC2A coding upstream 96631 6035989 ~ 6042020 (+)
CI01000020_06000788_06005009 NA coding upstream 133515 6000727 ~ 6005136 (+)
CI01000020_05988468_05989551 NA coding upstream 149098 5988251 ~ 5989553 (+)
CI01000020_05960777_05981596 NA coding upstream 156353 5960777 ~ 5982298 (+)
CI01000020_06272024_06286697 NA coding downstream 129464 6272024 ~ 6286956 (+)
CI01000020_06652576_06656275 NA coding downstream 510016 6652576 ~ 6656971 (+)
CI01000020_06769551_06772924 NA coding downstream 626750 6769310 ~ 6774074 (+)
CI01000020_06784747_06793255 NA coding downstream 641911 6784471 ~ 6794581 (+)
CI01000020_06795794_06800988 GLT8D2 coding downstream 653234 6795794 ~ 6801095 (+)
G114161 NA non-coding upstream 3372 6134530 ~ 6135279 (+)
G114217 NA non-coding upstream 40935 6097491 ~ 6097716 (+)
G114216 NA non-coding upstream 41772 6096644 ~ 6096879 (+)
G114200 NA non-coding upstream 68335 6070104 ~ 6070316 (+)
G114151 NA non-coding upstream 125215 6012955 ~ 6013436 (+)
G114238 NA non-coding downstream 22107 6164667 ~ 6166211 (+)
G114242 NA non-coding downstream 28699 6171259 ~ 6181364 (+)
G114256 NA non-coding downstream 67044 6209604 ~ 6211436 (+)
G114274 NA non-coding downstream 84314 6226874 ~ 6230133 (+)
G114284 NA non-coding downstream 108507 6251067 ~ 6251391 (+)
G114094 NA other upstream 332933 5803052 ~ 5805718 (+)
G113929 NA other upstream 513419 5622707 ~ 5625232 (+)
CI01000020_05267250_05267668 MRPS33 other upstream 869978 5267250 ~ 5268673 (+)
CI01000020_04807118_04808453 NA other upstream 1314865 4806765 ~ 4809414 (+)
G114382 NA other downstream 449664 6592224 ~ 6593564 (+)
G114389 NA other downstream 455786 6598346 ~ 6600180 (+)
G114388 NA other downstream 481707 6617328 ~ 6644816 (+)
G114413 NA other downstream 660988 6803548 ~ 6808718 (+)

Expression


Co-expression Network