Gene
RNA
| Item | Value |
|---|---|
| gene id | G114238 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000020 |
| NCBI id | null |
| chromosome length | 7209782 |
| location | 6164667 ~ 6166211 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU129744 | True | 536 | lncRNA | 0.46 | 5 | 6164667 | 6166211 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000020_06122192_06132967 | PPFIBP1A | coding | upstream | 31024 | 6122192 ~ 6133643 (+) |
| CI01000020_06035989_06042016 | TMTC2A | coding | upstream | 122647 | 6035989 ~ 6042020 (+) |
| CI01000020_06000788_06005009 | NA | coding | upstream | 159531 | 6000727 ~ 6005136 (+) |
| CI01000020_05988468_05989551 | NA | coding | upstream | 175114 | 5988251 ~ 5989553 (+) |
| CI01000020_05960777_05981596 | NA | coding | upstream | 182369 | 5960777 ~ 5982298 (+) |
| CI01000020_06272024_06286697 | NA | coding | downstream | 105813 | 6272024 ~ 6286956 (+) |
| CI01000020_06652576_06656275 | NA | coding | downstream | 486365 | 6652576 ~ 6656971 (+) |
| CI01000020_06769551_06772924 | NA | coding | downstream | 603099 | 6769310 ~ 6774074 (+) |
| CI01000020_06784747_06793255 | NA | coding | downstream | 618260 | 6784471 ~ 6794581 (+) |
| CI01000020_06795794_06800988 | GLT8D2 | coding | downstream | 629583 | 6795794 ~ 6801095 (+) |
| G114230 | NA | non-coding | upstream | 22107 | 6138651 ~ 6142560 (+) |
| G114161 | NA | non-coding | upstream | 29388 | 6134530 ~ 6135279 (+) |
| G114217 | NA | non-coding | upstream | 66951 | 6097491 ~ 6097716 (+) |
| G114216 | NA | non-coding | upstream | 67788 | 6096644 ~ 6096879 (+) |
| G114200 | NA | non-coding | upstream | 94351 | 6070104 ~ 6070316 (+) |
| G114242 | NA | non-coding | downstream | 5048 | 6171259 ~ 6181364 (+) |
| G114256 | NA | non-coding | downstream | 43393 | 6209604 ~ 6211436 (+) |
| G114274 | NA | non-coding | downstream | 60663 | 6226874 ~ 6230133 (+) |
| G114284 | NA | non-coding | downstream | 84856 | 6251067 ~ 6251391 (+) |
| G114355 | NA | non-coding | downstream | 248797 | 6415008 ~ 6416595 (+) |
| G114094 | NA | other | upstream | 358949 | 5803052 ~ 5805718 (+) |
| G113929 | NA | other | upstream | 539435 | 5622707 ~ 5625232 (+) |
| CI01000020_05267250_05267668 | MRPS33 | other | upstream | 895994 | 5267250 ~ 5268673 (+) |
| CI01000020_04807118_04808453 | NA | other | upstream | 1340881 | 4806765 ~ 4809414 (+) |
| G114382 | NA | other | downstream | 426013 | 6592224 ~ 6593564 (+) |
| G114389 | NA | other | downstream | 432135 | 6598346 ~ 6600180 (+) |
| G114388 | NA | other | downstream | 458056 | 6617328 ~ 6644816 (+) |
| G114413 | NA | other | downstream | 637337 | 6803548 ~ 6808718 (+) |
