G114355



Basic Information


Item Value
gene id G114355
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 6415008 ~ 6416595 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU129873
AGCAGGTACTCAACAGTGAAGATCATGACGCAGGCCGTATCCAAACAGAAGAACGCGAGGGCGTAGCGTTCTCCGCACGAGATCTCCTTCGCCCGGTTTGGCGCGCTGCCACACGGGACCGTCTCCACCACATTGGCCATAACGGAGACGGCGATGAAAAAGCCCGTGACGTAATAGAACACCAGCGCCATGGTGCTCGTGTGCGGGTTCTCAAACGCGCGCCACATGGACTCGCGGAACGACATATCCGGCGGCACCATATCTTTGCTGTTGTCGTTCTCCTCATCGTCTTGAATCCTCTCCGTGTTCTCCCTCCTGCGATCTTTGTACTCCTCATAACAGCAGTCCCCTATTATCTCAGGAATGATGCCGAAGAAGGCCAGCTCCTCGTCATAGGCGGAGATGCACTCGTGGCGAGGGTAGTGCAGCTTCCCGGTTCGGTAGAAGTTGAGGATGTGCCTGAAGATGTCCGGGTCGCGGTCGAAAAAGTACTCGTTGCTTTCCTCGTGGAAGAAGAAGTCGCGCTCTGTGCTTCCTAGTAAGGTGTCAGGGTACCTCTCCAAAGTATTCCGCCAAGTTTGAAACCTAGTGCCGCTGACATTCAAGATGATCAGGCCGTCCTGACCTCGCCTCTTTTCTCGTGGAGGCGGCGGCATCGGTGCGCTCGCCACGGGCATCCATCCTATGGCCGCGGCGCGCGCGAACGGTAGCCACGCGGCGACTCCGGCTGCCATGCTGACCCAATGTGCGCGACCCGGTGAGACTGAAGCAGGCTTTGCGCTCACAGATCCGGCACGAACAGAAAGGACATCTCCTCATAAATGGATTTTGATGCAAAAGTGCAGTTTTTTACACACAGATCATCAGTTATAGTCCACTTTGAATCGCTGTTCCGCCGTTACACATAAATAAGTATCCGAAATGCGCTCTCGGAGGTGTTCTAGAGCAAATGCAACAAGTTTAGAAGTCAGGTAGAGGATTTGCGTAGTCCAAGGACATCCTTTTTACCGGCTAAAGCTTTTGTGTTTCACACTGGAGAAACCTGCCACAGTGGTCCTTTCATAGGAAGAGAAGACCACCCTGGCGAGTGCGCGCTCTGTGTTTCAAAAGCAGAGAATGTCACTTTCCTATCCGCTTCTGTTAAATATAATCCAATGACCCGAGAACTGTTTCGCAAGGTCTGCCTGTAACCCGAACAAAAAGTGAACCCGCAACAAATGATTCGCTGGAAGTTGCTTCATCCGCTACCGACGAAGATCTGTGAGTCTGCGGTGGAGCCCAAGTTGCTTCTGCTCACGGCGCATTGGAGGCGT

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU129873 True 1313 lncRNA 0.53 2 6415008 6416595
Loading

Neighbor


gene id symbol gene type direction distance location
CI01000020_06272024_06286697 NA coding upstream 128052 6272024 ~ 6286956 (+)
CI01000020_06122192_06132967 PPFIBP1A coding upstream 281365 6122192 ~ 6133643 (+)
CI01000020_06035989_06042016 TMTC2A coding upstream 372988 6035989 ~ 6042020 (+)
CI01000020_06000788_06005009 NA coding upstream 409872 6000727 ~ 6005136 (+)
CI01000020_05988468_05989551 NA coding upstream 425455 5988251 ~ 5989553 (+)
CI01000020_06652576_06656275 NA coding downstream 235981 6652576 ~ 6656971 (+)
CI01000020_06769551_06772924 NA coding downstream 352715 6769310 ~ 6774074 (+)
CI01000020_06784747_06793255 NA coding downstream 367876 6784471 ~ 6794581 (+)
CI01000020_06795794_06800988 GLT8D2 coding downstream 379199 6795794 ~ 6801095 (+)
CI01000020_06809322_06816591 NA coding downstream 392727 6809322 ~ 6816591 (+)
G114284 NA non-coding upstream 163617 6251067 ~ 6251391 (+)
G114274 NA non-coding upstream 184875 6226874 ~ 6230133 (+)
G114256 NA non-coding upstream 203572 6209604 ~ 6211436 (+)
G114242 NA non-coding upstream 233644 6171259 ~ 6181364 (+)
G114238 NA non-coding upstream 248797 6164667 ~ 6166211 (+)
G114356 NA non-coding downstream 4057 6420652 ~ 6421018 (+)
G114357 NA non-coding downstream 5118 6421713 ~ 6422152 (+)
G114376 NA non-coding downstream 94624 6511219 ~ 6511539 (+)
G114393 NA non-coding downstream 124829 6541424 ~ 6541667 (+)
G114388 NA non-coding downstream 200733 6617328 ~ 6644816 (+)
CI01000020_05960777_05981596 NA other upstream 433760 5960777 ~ 5982298 (+)
G114094 NA other upstream 609290 5803052 ~ 5805718 (+)
G113929 NA other upstream 789776 5622707 ~ 5625232 (+)
CI01000020_05267250_05267668 MRPS33 other upstream 1146335 5267250 ~ 5268673 (+)
CI01000020_04807118_04808453 NA other upstream 1591222 4806765 ~ 4809414 (+)
G114382 NA other downstream 175629 6592224 ~ 6593564 (+)
G114389 NA other downstream 181751 6598346 ~ 6600180 (+)
G114413 NA other downstream 386953 6803548 ~ 6808718 (+)

Expression


G114355 Expression in PRJCA010000

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G114355 Expression in each Bioproject

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G114355 Expression in each Sample
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Co-expression Network