G114389


Basic Information

Item Value
gene id G114389
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 6598346 ~ 6600180 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU129931
GGTGGAAAAAGAGACAAACTCTGCGTCTGAATTTGCCTACTTCCCAACTATATAGTAGGTGTAAAACAGAAAGTAGGCATAAGACAAGTAGTATGTCTGAATTCATAGAACAGTAAGAGAAAAGTACCCGGATGACCTCCTACTTCTGATTCTGAAGTGCATCTGATGAACACTTTACTATCCCATGAGGCCACAGTAAATGAGATGTGAATGACAGTTAAGCTACGCAACTGACGCTGGTAGGTCACATGACATTGACAAAATTGTGGATGTAGTACGTCTGAATTTCATTCTTACTACCCATATTCATACTACACAAAACATACGTTTTTAACAGTCATGAACTAAGTATCAAGCCAAATGTAGTTCCTACTAGACATTATGCAATTTCGGAAAGACTTGACACCCCTCCCCATTGTCTTATTCCATCTCTGCTCACCTGGAATCTTGAGGTTTAGGTCGCAAGTGCTGCCCACTGTGGCGATAGAGGGCGCCTGCCTCTTTCTGGTAATACTCTCCTTCATTCTTCCCTCACCCAGAACCTTCACTGTAAATGGACTTCCTGGCACATGTTGGTCTGCGAATTTTATGTTGATGATGTATGTTCCAGGTTCGGTTGGGCAGTAGGTCACTTTGCATGTTCCGTCTTCCACATCCGAACAATTAATGTCAACTTTGCTTGGCCCCTCGATCGACAGACCCAGACCTCCATAACCTGCACTTCTGGTGTCCACGATGAACTCAGCCACTTCAAAGGTGTGTCCTTCGATCAGACCTTTTCCAAACACCTTCACTTTACTGGCATCACCAATCTCAGACTGGCCCACCATGATCTTGAATGGGCTGTTGGTCACATGTTTTCCATTCTTCTTCACGCTGACCACATGCTCACCGACCTCTTTAGGAGTGAAGGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU129931 True 915 TUCP 0.44 3 6598346 6600180

Neighbor

gene id symbol gene type direction distance location
CI01000020_06272024_06286697 NA coding upstream 311390 6272024 ~ 6286956 (+)
CI01000020_06122192_06132967 PPFIBP1A coding upstream 464703 6122192 ~ 6133643 (+)
CI01000020_06035989_06042016 TMTC2A coding upstream 556326 6035989 ~ 6042020 (+)
CI01000020_06000788_06005009 NA coding upstream 593210 6000727 ~ 6005136 (+)
CI01000020_05988468_05989551 NA coding upstream 608793 5988251 ~ 5989553 (+)
CI01000020_06652576_06656275 NA coding downstream 52396 6652576 ~ 6656971 (+)
CI01000020_06769551_06772924 NA coding downstream 169130 6769310 ~ 6774074 (+)
CI01000020_06784747_06793255 NA coding downstream 184291 6784471 ~ 6794581 (+)
CI01000020_06795794_06800988 GLT8D2 coding downstream 195614 6795794 ~ 6801095 (+)
CI01000020_06809322_06816591 NA coding downstream 209142 6809322 ~ 6816591 (+)
G114393 NA non-coding upstream 56679 6541424 ~ 6541667 (+)
G114376 NA non-coding upstream 86807 6511219 ~ 6511539 (+)
G114357 NA non-coding upstream 176194 6421713 ~ 6422152 (+)
G114356 NA non-coding upstream 177328 6420652 ~ 6421018 (+)
G114355 NA non-coding upstream 181751 6415008 ~ 6416595 (+)
G114388 NA non-coding downstream 17148 6617328 ~ 6644816 (+)
G114464 NA non-coding downstream 46944 6647124 ~ 6647576 (+)
G114440 NA non-coding downstream 48047 6648227 ~ 6649564 (+)
G114478 NA non-coding downstream 80293 6680473 ~ 6681021 (+)
G114491 NA non-coding downstream 155692 6755872 ~ 6756133 (+)
G114382 NA other upstream 4782 6592224 ~ 6593564 (+)
CI01000020_05960777_05981596 NA other upstream 617098 5960777 ~ 5982298 (+)
G114094 NA other upstream 792628 5803052 ~ 5805718 (+)
G113929 NA other upstream 973114 5622707 ~ 5625232 (+)
CI01000020_05267250_05267668 MRPS33 other upstream 1329673 5267250 ~ 5268673 (+)
G114413 NA other downstream 203368 6803548 ~ 6808718 (+)

Expression


Co-expression Network