CI01000021_01288735_01291953 (LMOD3)


Basic Information

Item Value
gene id CI01000021_01288735_01291953
gene name LMOD3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 1288596 ~ 1291962 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_01288735_01291953.mRNA
CCATAAATACCGTCCCCTCTGTTGAATGGAGGTTATTTTAGATCGTACATGTGGCATAAGGCCTTGAGTCCTGCCGTGACACTCACTGTGCTTTGAAACCAGCAGCTGTAGTGGAGTTCTTGAAAACACAAAAGTGGACATGTCCGAGCACACTGATCAGGATTCATGCACAGAGGAGATCGATGAAGATGAGATTCTTGCCGGCCTCTCGGCAGAGGAGCTCAAACAGCTCCAGAGTGAGATGGACGACATTGCTCCTGACGAGAGAGTGCCGGTGGGAATGAGACAGAGAGACGCTTCTCATGAGACGACAGTCCGAGATTGCAGTGAGCCCCAGTCAGAAGAGGAAATCGATGAGGATGAGATTCTGGCAGGCCTCTCGGCAGAGGAGCTCAAGCTGCTCCAGAGTGAGATGGAAGAGATCGCTCCTGATGAGAGAGTGCCGGTGGGAATGAGGCAGAGAGACCAAACTGACAAACCACCCACTGGATCATTTGATCACAGATCACTGGTGGAATATCTGTACTGGGAGAAAGAGTCCAATCGTATGCTGGAGGAGGAGAGAGTTCCCACAACTCTATTGCCCAGTCAGAAGAAAACCGATGAGGAGCTTGAAGCAAAAGAAGAAGATAAAGTTGAAGAGGTGGAATATGTCTATGAGGAGATCGTTGAGGAGGTTGAGGGAGGAGAGGGAGATGTTGTTGTTGATGAAGTGATTGAAGAAGTGATAATAGAGGTTGAAGAAGAGGACAAAGCAAGCAACCAGCCTGTCAAGACAGAACTTGATGCCACTAAACTCATAGTGACATCAGAAGATGGTTTACAGCTGCCTCCAGAGGTTGAAGATATAAAAGTTGAAGCAAAGACTGAACAATCAGGACTTAATGAGACAGAATCTGAGACGAATGAGGAGAAGTTAGGTGATTCCATCCAGTCTGAACCTGCTCCCTCTTCGTATGAGAACTGGGTTCCTGAGAAAGAGGAAAGGGTCATATCCAAGCTGAAGATCCCAAAACTTGCCCTAGGTGGAAGCACTTTTGTTAAAAAGACTGCAAGACCTTCTGGGAATGAAACAAATTTGGAGACCACTTTGGATAAGATCCGCAACAACAACGCCTCTGTCACGGATGTCAATCTCAACAACATTGAAAACATTCCCAAAGTTATGCTCCTTGATTATGTCAACGCTCTCAAGAAGAACAGACATGTTAAGACCTTTAGCATTGCAAACACCGGCGCAGACGAAAATGTGGCATTCGCTTTAGCTAACATGCTCAGAGAGAACAGAAGCATCACCACACTAAATATTGAATCCAATTTTATCACAGGAAAAGGGATTGTGGCAATAATACGTTGCCTCCAGTTCAATGAGACACTTACTGAGCTCCGCTTCCACAACCAAAGGCACATGCTAGGACACCATGCAGAAATGGAAGTGTCTCGTCTCCTCAAGGCTAACAACACTCTTCTGAAGATGGGCTACCACTTTGAACTCCCTGGGCCTCGGATGGTGGTCACCAATCTCCTCACCAGGAACTTGGATCGTCAGCGGCAGCAGAGAATGGAGGAGCAGAAGCTCCAGCAGATGAAAGAGCAGAGGAAGGTCATGGAGATGTATGAGAACTCTCTGAACTTGCCCCCTGGCATGTTGGAAATGCTAGGAGGCTACATACCGTTGTCCCTACTGCAGGGTTCTCATGATGGGGCTGAGGAAAGTCCTGAAGTTTCTCCTGAACCTTCACCACAACCAAGTCCTCCTCAGCAGCTCCGCAAGAGTCATTATCTTGCCCCACAACAACATCCTCCTAGTTCAGAGACAGGAAACCTCTTAAAGGAAGTACATCTGAAAAAGACTCCAAAACGAAGGGATCCACTTCTGGAACTGAACCAAATGGATGAGAGGAAAGAGGGAAGAGCTAATGTTCAGCTGAGAAGTGTTCCTAAACAAAGAAGCACAGCAAGGGAAGGACCTGCAGATGAGAGAGCCAACCTGAAAGATATGATAAAGACTCTAAAGCCGGTTCCTCGAAGGCGACAGCCACCTAAAGTGGAGCTAACACCTCGGGATCAGTTGCTGAGCGAGATTCGACAGAGCAATGTGGCCTATCTCAAAGCAGTACGTAGTGTTTAAGTCTCTCAA

Function

symbol description
lmod3 Predicted to enable tropomyosin binding activity. Acts upstream of or within muscle contraction and skeletal muscle thin filament assembly. Predicted to be located in M band. Predicted to be active in striated muscle thin filament. Human ortholog(s) of this gene implicated in nemaline myopathy 10. Orthologous to human LMOD3 (leiomodin 3).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006936 muscle contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_01288735_01291953.mRNA True 2140 mRNA 0.47 3 1288596 1291962

Neighbor

gene id symbol gene type direction distance location
CI01000021_01274202_01280110 NA coding upstream 6837 1273594 ~ 1281759 (+)
CI01000021_01264188_01268643 NA coding upstream 19731 1262438 ~ 1268865 (+)
CI01000021_01219723_01256723 ZBTB46 coding upstream 31516 1219723 ~ 1257080 (+)
CI01000021_01129847_01154032 UCKL1B, UCKL1 coding upstream 134288 1129847 ~ 1154308 (+)
CI01000021_01100408_01104630 NA coding upstream 183966 1100408 ~ 1104630 (+)
CI01000021_01332646_01333910 NA coding downstream 39703 1331665 ~ 1333951 (+)
CI01000021_01463736_01472529 CACNB3, CACNB3A, CACNB3B coding downstream 171774 1463736 ~ 1472886 (+)
CI01000021_01506852_01513139 BIRC7 coding downstream 214254 1506216 ~ 1513306 (+)
CI01000021_01519982_01528860 GSS coding downstream 228020 1519982 ~ 1529105 (+)
CI01000021_01717640_01718394 NA coding downstream 425678 1717640 ~ 1718879 (+)
G115759 NA non-coding upstream 98885 1189482 ~ 1189711 (+)
G115754 NA non-coding upstream 103660 1184669 ~ 1184936 (+)
G115750 NA non-coding upstream 106648 1181724 ~ 1181948 (+)
G115685 NA non-coding upstream 173260 1110455 ~ 1115336 (+)
G115721 NA non-coding upstream 394637 893528 ~ 893959 (+)
G115684 NA non-coding downstream 19865 1311827 ~ 1316148 (+)
G115791 NA non-coding downstream 92977 1384939 ~ 1386229 (+)
G115780 NA non-coding downstream 116241 1408203 ~ 1408451 (+)
G115817 NA non-coding downstream 118365 1410327 ~ 1410607 (+)
G115824 NA non-coding downstream 134513 1426475 ~ 1426764 (+)
G115519 NA other upstream 804632 480530 ~ 483964 (+)
G116236 NA other downstream 997855 2289817 ~ 2297195 (+)
G117237 NA other downstream 1945892 3237854 ~ 3243364 (+)
G117202 NA other downstream 1977182 3269144 ~ 3328233 (+)
G117484 NA other downstream 2664184 3956146 ~ 3957752 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021531 lmod3 coding NC_007134.7 CM002907.2 13814978 ~ 13822642 (+)