CI01000021_02335864_02337990


Basic Information

Item Value
gene id CI01000021_02335864_02337990
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2335363 ~ 2341260 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_02335864_02337990.mRNA
ATAATTTGAGTTAAAAAGCTGTGTTAAAAAAATGTGTAGTGTTATTTTGCACTGCTGAAATGAACAGATTGACATTTGTGCAAGAGTTTTTTAAAACCACTCTGAGCTCAGTAACAAAACATACATTTAAAACTGTACTTTACAGCATCATAAAGACACAACATTACTATTTGAAGGCTTTTGTAGTATCTGACAATTTCATTAATAATTTACGCCAAAAGGTTGAAATTCCCTTTAACAGAAGAATTTATACTATATTCTTTACTGAAAAAGCAAATCAGTCCAAGGCAGCTGAATGTAAACAACACAGTTCAGAGTCAACAGCCTCGCTTAATACTTTCCCATGTCTATTCGAAATAATGTGTTCTAGTGTAACGGAGGCCAGCTAGTAGTTGCTGTGCGAGTAAACCTCACTCCTCTGATCTCAAGAGATGCTCTAGCAACTGACACTAGAGGTTGGAGCCTTTAACCTCCTCGTTAGAGCGTCCGACGCCCGCGCAGAGCGGGGGGCGAGTAGGACCTGGGTAGAGGGGTTACATTGGTGCTGTGACCCGGATGGGAGTGAGGTTTAGGGGGGTGAGTGTAACGGAGGCCAGCTAGTAGTCGCTGTGCGAGTAAACCTCACTCCTCTGATCTCAAGAGATGCTCTAGCGACTGACGCTGGAGGTTGCAGCCTTTAGCCTCCTCGTTAGAGCGTCCGACTCCCAAGCCGGAGACCCAGGTTCGAGGCCCACGCAGAGCGGGGCGAGTAGGACCTGGGTGAGGGGTTACACTAGTGGTGCTGAAATAAAGGACGGTTGATTCAAGTCTCCTAAAGAATAATACAAACACAACTGTATTACATCTCTGTGAAGTTCATGATGGCTGCAAATAAATATTCTGGGTGTCACAACAAAATGGGTGTACTCAGTACAAATGAACTGGTAAACTTTGACAGAAAAGTGTGAAATAAGAATCCAAAAGGAAAAGAACTATAGGAGTATATTGAGCCAATAAGTGGACAATAATACCTCTGCTGCCATCTACTGGTAATTTTATATTTTCCACCAGAAATGTCCGCTAAAGCAAGGCACATTTAACCATTAAGCATGATTATACACACACACACACACACACACTCTCACACGCACACACACGCACGCGCACACACACACACACACACACACACACACACTTTTTGTTGTAGATATAGATATTTTAAATAACAAAAAGCTTACTCCAAGTCTCCACTTTATAATGCAATTTTCATCTTTCACAGACATTTAGATATATCATATCTATATCTAATGTTAAATGACAGACAGTCATATCCAATGATGCAACTACTAAATTTGTTTTTTATTAAATCTCACCATTTTGAATTGAAAATATGCTATCATTTACAGATATTTTAAATAAATGCAAGAAAATGCTTATTCCAGATCTCCCCTTTATGCCAATTTTCACCTGCGTAGTGCCTACATTCTCGTTCGATACGTGAGGGTGATGAGTGGAAAACTGCCTTCATAACACCTGCAGGACAGTACGAATACCTCATTATGCTTTATGGCTTGTCCAACTCAGCCTCCGTATTCCAAGCCTTCATGAATGAGGTGTTCCGGGAGTTTCTCCATCTCTTTGTCATCATCTACATGGTCGACATTCTCATCTACTTCTGGAACCTGGCCGAACATTGCCACCACATGATGCAGGTCCACCAGAAACTGAGAGAATACCACCTCTATCTCAAGCTGGAAAACTGTGAGTTCCACCGCGACACCATCCTCTTCCTCGGATACATCATCACCAAGAATGGCATGCAAATGGACCAGAGGAAAGTGGATGCCATCCGCAGTTGGCCACAACCCACCACAATCAAAGATCTGCAACGTTTCCTGGGTTTTGCCAACTTTTATTGTCGGTTCATCCCAAACTACAGTTCCATCACTTCATCACTCACCTCTCTTCTGAAAACAAGTCTCTGTCCTGGAATTCTCTTGCCACAAAAGCCTTCCAACAACTCAAAGAAGCCTTCTGTTCTGCTCCAACCCTGGTCTATCCTAATCCAGAACTACCCTTCATCGTGGAAGTAGACGCCTCTACGACCGGGGTTGGAGCCGTGCTATCCCAGCGACAGGGTGATCCATCAGTCCTCCATCAATGTGCCTTCTTCTCCAAGAAACTGTCCCTGGCGGAGCGGGAATTACGGCATCAGAAACCGTGAACTGTTAGCAATCAAGAAGAGTGGAAGAGTGGAGACACTGGCTGGAAGAGTGGAGGCACTGGCTGGAGGGAGCGAAGCATCAGTTCGAGGTAATCACTGATCATTGCAACCTCGAATATCACTGTGATGCCAAAAGGTTGAATCCTCGACAAGCACTTTGGGCATTGTTCTTCACGTGATTCAGTTTCATCATCACTTACCGCCCTGGGGATAAGAATCTACATGCTGATGCCCTCTCATGCCTGTATCACCCCGAACAAGATCTATCTGCACCAGAACCAATCCTCCCTCCAGCCATCGTCATGAGTCCCATCCAATGGTCTCTGGACGACTAGATTGTCGATGCCACATGCTCTGAACCTGCTCCGCGGGAGGTCCTGAGGGACGGGCTTACGTACCATCTGCCCTGCGCCTGTCTCTCAGTTCATACATCTTTGGGCTCTAGACACCCAGGCAGCCAGCGAACCCTCTCGTTTCTCCAAAACAAATACAAGTGGCATGAAATGATCCAGGATGTCTCCCGTCAAAGCCTGTTCAGTCTGTGCCATCTCACAAACTCCTTGTCATCTTCCTGCTGGCAAACTGGTTCCACTACCCATTCCCAACCATCCATGGTCCCATATTGGTATTGACTTCACCACTGATCTTCATCCATCAGAATCCTACACCTGCATCCTGGTAGTCGTCGACAAATTCTCTAAAGCCTGCAAGCTAATACCCTTTAAAAATGTTACCCACAGCATTAGACACTGCAGACCGTGAGGACCACGAAGATCTGGTATGTCAGAATCAAAACAAAAGTTGGTCACTGAGCATAAAATGAAGCTTCTGCCATGGTCGTCCCAGTACCCTGACCTGAACACTATGGAAAATGAGTGGGGTGAACTGAAGACCAAGTGAAGCACCAACATGGAGCTGGGAATCTGAATGAGTCACTTACCATCCGGGACAAAAGGTCTGGCTGTCAACCAGGGACATCCGTCTTCATTTGCTCTGTCGAAAGACTGTGTAGATGACATACCTCTGCCTCCACCTGAGATCATTGAGGAGGACAACATCTTGTCACGATGGGGCAGCCTTCTCGAGTACCTGGTGGAATGGGAAGGATATGGCCCGAGGAAAGATTGTCGGTGAGCCGTGATGATATCCTAGACCCATCCTTACTGACGGACTTCCACACCAATCATCCAAACCGTCCAGCTCCCAGAGGTCGAGGCTGTCCCCAACATCATCCTGTGCAGTCTTCAGGATCCACCCGTGCAGAGGGGGTCAAAGAAGAGTCAAGCTACTTTGTGCAAGTGTACACAGAACCCCTGCTGGTAAATCTACCCACACCTGACTTCAGCATGCCCTACAACGTCATCTGTCTCACCTGCATGGTGGTCGCGGTGGGCTACGGCTCCTTTTACAACTTGCTGACCCACACGTTCCAGGTGGATGAACCGAGTCCACCGCTGGCCAAACGCTTGGCTAACCTCGTTCGTCGCATAAGGGGAGTGCCACTGCTGATCTAACTGCCGAGAGCAGGTCTGACGCCTGAAATGTCCATATTAGGCAGCTGAGAGAATCATGACTTTAATACAGCATCTGCTGGAGTTTTAAGATGATTTTCAGCCCTGGAAGGACTCAATGCCAAGTGACTGTTCTGAACTTTTGTTGAACAAATAAGCTTCCAAGACAGATGGATTAGCCGCCCTTTTATGTTTTTTTGTTTTGTTTTGTTTTGTGAATCACCTCTTTGAGAGCGTGACCAAGTGTCACAGAAACACAGACACCACAATCCAACTACTGGAAATGGATGTCTAAAAATGTGGCAAGTATTTTCTACTTTCCGTAATGCACTGATATTCAAATATGTGTTGTTTTGAAGGACTGGACTGTTTTTAGTGTTTTGGCTTTTTTTTTTTTTTGTGCATTTGCCTGTGGGCAGACCACATAATGACCTCCAGACTGGGTGTTATTGAATTCAAATTCTGAAGCATCTCTTTAACACTGGTTAACTTTCACATAATAAA
>TU132804
CTGGTTTATGCCTAGGAGCATAGAGAATATAGTTTTAGTTTATATAGTTTAGAGACTCTTGCTTCTCAAGTATTTTGAAAGATCCAGGTTCTTTTGTAATTCTTGACTAAATATAAATCATAAAATGTCATTTTTGTTGTACGAATGTTACACATCCTGTGTGCCACTCCCTATATCTGACTGATGTGCCATAAATATGTTACTGCAGATCCTCTGTGGTCAGAGCCCTTGTGCCAAGCATGGTTGCAATGAACACCAACTTCACACAAGACCAACCATTGTTTAGCAGTTTGTAAGTATAAACTGGCCTTGGTGTTTTGGTTCTTTATAACTTTTTCACCTCTGACTTCCAGTATCCCAGTCAAAGAAGAGTCAAGCTACTTTGTGCAAGTGTACACAGAACCCCTGCTGGTAAATCTACCCACACCTGACTTCAGCATGCCCTACAACGTCATCTGTCTCACCTGCATGGTGGTCGCGGTGGGCTACGGCTCCTTTTACAACTTGCTGACCCACACGTTCCAGGTGGATGAACCGAGTCCACCGCTGGCCAAACGCTTGGCTAACCTCGTTCGTCGCATAAGGGGAGTGCCACTGCTGATCTAACTGCCGAGAGCAGGTCTGACGCCTGAAATGTCCATATTAGGCAGCTGAGAGAATCATGACTTTAATACAGCATCTGCTGGAGTTTTAAGATGATTTTCAGCCCTGGAAGGACTCAATGCCAAGTGACTGTTCTGAACTTTTGTTGAACAAATAAGCTTCCAAGACAGATGGATTAGCCGCCCTTTTATGTTTTTTTGTTTTGTTTTGTTTTGTGAATCACCTCTTTGAGAGCGTGACCAAGTGTCACAGAAACACAGACACCACAATCCAACTACTGGAAATGGATGTCTAAAAATGTGGCAAGTATTTTCTACTTTCCGTAATGCACTGATATTCAAATATGTGTTGTTTTGAAGGACTGGACTGTTTTTAGTGTTTTGGCTTTTTTTTTTTTTTG

Function

NR:

description
pol polyprotein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_02335864_02337990.mRNA False 4218 mRNA 0.45 2 2335363 2341260
TU132804 True 1003 lncRNA 0.42 1 2335467 2336469

Neighbor

gene id symbol gene type direction distance location
CI01000021_02317457_02320931 HAUS8 coding downstream 13700 2317457 ~ 2321663 (-)
CI01000021_02309119_02315738 NA coding downstream 19625 2309024 ~ 2315738 (-)
CI01000021_02299075_02305974 MRGBP coding downstream 29389 2298424 ~ 2305974 (-)
CI01000021_02290326_02297117 EEF1A1, EEF1A2, EEF1A1A, EEF1A2.S coding downstream 38246 2289943 ~ 2297117 (-)
CI01000021_02191178_02193192 NA coding downstream 142015 2190044 ~ 2193348 (-)
CI01000021_02386235_02398978 PIGT coding upstream 44326 2385586 ~ 2398978 (-)
CI01000021_02458161_02471710 NA coding upstream 116894 2458154 ~ 2471710 (-)
CI01000021_02492524_02493429 PPP1R3DA coding upstream 150877 2492137 ~ 2493429 (-)
CI01000021_02503590_02509554 TTLL9 coding upstream 161308 2502568 ~ 2509554 (-)
CI01000021_02522404_02530893 NA coding upstream 180793 2522053 ~ 2530893 (-)
G116900 NA non-coding downstream 4287 2330683 ~ 2331076 (-)
G116891 NA non-coding downstream 4932 2330226 ~ 2330431 (-)
G116889 NA non-coding downstream 5489 2328063 ~ 2329874 (-)
G116872 NA non-coding downstream 84078 2250802 ~ 2251285 (-)
G116848 NA non-coding downstream 146871 2187864 ~ 2188492 (-)
G116957 NA non-coding upstream 193808 2535068 ~ 2535384 (-)
G116962 NA non-coding upstream 251491 2592751 ~ 2594183 (-)
G116959 NA non-coding upstream 267314 2608574 ~ 2616059 (-)
G117104 NA non-coding upstream 405818 2747078 ~ 2747812 (-)
G117136 NA non-coding upstream 525943 2867203 ~ 2867432 (-)
G116893 NA other downstream 1047 2331314 ~ 2334316 (-)
G116856 NA other downstream 124867 2209921 ~ 2210496 (-)
G116730 NA other downstream 972559 1361878 ~ 1362804 (-)
G116997 NA other upstream 371525 2712785 ~ 2713247 (-)
G117683 NA other upstream 550600 2891860 ~ 2892359 (-)
G117893 NA other upstream 702759 3044019 ~ 3044787 (-)
CI01000021_03902018_03931315 ACSS2 other upstream 1496162 3901897 ~ 3932508 (-)
CI01000021_04035411_04049515 CCM2L other upstream 1704024 4035189 ~ 4049592 (-)

Expression


Co-expression Network