CI01000021_05876056_05879110


Basic Information

Item Value
gene id CI01000021_05876056_05879110
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 5875568 ~ 5879110 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_05876056_05879110.mRNA
TACTGTGTGTTGCATGTTTACTTGGACTGCACGGAGAGCTTTAGACGCTCTGAGCAGCTCTTTCTCTGTTTTGAGGGACAACAGAAGGGGAAGGCTATCTCTAAACATGGGCCTTGGCATATCAGGCCAAGGGCACGCTGTGCCCCCAAGAGTGCGAGCAAATTTACAATCTCCAGGTTGAGCCAGTTTTGTCCCATGTGTTATCAGTTCTGTAATGAAATATGTCATGAAGCATGCCCTTTCAGGTCATCTCGTATACTTTGGCTAGAGCTCTGCACTGCCACCAGTCACTGTGTTGTAGAGCTCCTCCCTTTTCAGGTAGGACCTACCACAGAGACTTCTTTCCATGTGTGGTACTTCCTGGTTGGAAACAGTCCCTTTAGTAGAGGTGATTACACAGATCTGGTTCTTGACATTATTGGAGGTAGAATCTCACAAGCTCTGCATGGGATTCAAGGTATTGTAAGGGACAGTGAGTCCATGATTGTTGAGGAAAGTGACACAGTTCCTTCTAATGCAGGAGGAGCATTTATTCTGGATCTCAGCCCTGTTATTAAGGAAGAAAGTGGATCCTCACTGGTAGAGCCAGAAGTTATTGCCACAGGACAGAAGCATTCTTCGCCAAACAAAGATGATGTTGTCTATAAATCACTTGTTAAACAAGAAACTGAGAGAGCGGAAGTGCAGATTCATCTGGCAGATGAACAAATCACTCTTACCCAACTACAGCAAACCAAAGCCAGACTTGAGATCCAACTTCTAAAATCAGAGCTTCAAAAAGCTGGTCTCTCTACAAATGAAGAGCTCTAAACATTCTTTATTTTGTTAACTATTGGACATTTAGCCTCTTTATGATTTTAAACACGTTTCAGCACAAAAGTAAAATGGATTGCCTGATCCTAGATAGCAAAACATGGGATTTCTAAATCCACATCATTCTGATCCAGATTAAACTCTTTGAACAACTGGCCCCTGCTTACTATTGTAACCTCTATTCTCTGATGGAGGGAATGAGATGTTGTGTCCTTCCTGCCACAACACTGAATTACCCGCTGAAATGGCCGGGACACTGTCTTGGCTCCTCAGCACAAACCTAAATGAGTGGATACATGTCATCTCCTTTTATACCCGAATATCCCGGGAAATGGCCCTTGCAAATTCATCTCGTCAATTCTCATTGGCCTTTTTTTTTTAAAGTATCAGAGGTGTTTGGGGCTCCCAGGTGGGACCCCTAGTGTCAGTACATTAACAGAACATCTCCTTCCCCCCAATCAGCGAATGGAGTTTACAATAGTAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107710894

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_05876056_05879110.mRNA True 1298 mRNA 0.44 3 5875568 5879110

Neighbor

gene id symbol gene type direction distance location
CI01000021_05830018_05845856 SYN2A coding downstream 29432 5829305 ~ 5846136 (-)
CI01000021_05797550_05804777 CNBPA coding downstream 70791 5796708 ~ 5804777 (-)
CI01000021_05729351_05729635 NA coding downstream 145473 5729284 ~ 5730095 (-)
CI01000021_05693567_05698301 NA coding downstream 177267 5693173 ~ 5698301 (-)
CI01000021_05651690_05674009 NA coding downstream 201187 5651616 ~ 5674381 (-)
CI01000021_05892651_05906514 SLC6A1B, SLC6A1A, SLC6A1 coding upstream 12743 5891853 ~ 5907521 (-)
CI01000021_05918146_05919901 NA coding upstream 38587 5917697 ~ 5921113 (-)
CI01000021_05928007_05937412 TGM1 coding upstream 47665 5926775 ~ 5937771 (-)
CI01000021_05942137_05950309 RABGGTA coding upstream 62779 5941889 ~ 5950309 (-)
CI01000021_05961867_05972445 STXBP3 coding upstream 82485 5961595 ~ 5972445 (-)
G119229 NA non-coding downstream 89978 5782611 ~ 5785590 (-)
G119263 NA non-coding downstream 279325 5596009 ~ 5596243 (-)
G119262 NA non-coding downstream 279643 5595611 ~ 5595925 (-)
G119253 NA non-coding downstream 329341 5546021 ~ 5546227 (-)
G119212 NA non-coding downstream 352642 5522630 ~ 5522926 (-)
G119332 NA non-coding upstream 4095 5883205 ~ 5883413 (-)
G119359 NA non-coding upstream 121140 6000250 ~ 6000500 (-)
G119787 NA non-coding upstream 216048 6095158 ~ 6095456 (-)
G119791 NA non-coding upstream 218967 6098077 ~ 6098327 (-)
G119792 NA non-coding upstream 220409 6099519 ~ 6099884 (-)
G119233 NA other downstream 93322 5781074 ~ 5782246 (-)
G119267 NA other downstream 261579 5613442 ~ 5613989 (-)
G119215 NA other downstream 344642 5524855 ~ 5530926 (-)
G118801 NA other downstream 721277 5153891 ~ 5154291 (-)
G118639 NA other downstream 1108196 4750097 ~ 4767372 (-)
G119967 NA other upstream 923745 6802855 ~ 6807625 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G240851 NA non-coding NC_047609.1 CM018555.1 14549083 ~ 14549425 (+)