G115660


Basic Information

Item Value
gene id G115660
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 769483 ~ 786300 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU131384
GGGAAACAAGCTTCCATTAATAACAGACAAGTGGAATCACAATATTTTATTTATTGCAAAAATGTCAAAAGAGGTAACAAAAGTAGTTCAAATGACGATGTGTCGCAGTCCTCTCTGGCCGTATATAATACATTTGTATGAGGTGCACAGAAGAATTTAAGTTCTATTCGTATGTAAAAATACATACGAATACTCATGGGATAACATTATCCTTGGTGAACATAAAAGACATTTTAAACAATATTTCCAACCACAAATTTCTGAACAGTAGCTTATATGATTAAGTGAAAATTAAAAATCTAATAAGAAATTATGCATCTTAAACCATAAATACAATATTATCAACAATGTCACATGGCTACTTGCTGGTACAGTGGTGTGAATGTTGCCAAAAATGTGATAAAGCCATATCCTCTGGATTTCCCCGTTTGTCGGTCCGTTATTACCACGGCTTCATCGATGTCGCCGAAAGTCTCGAAGTATTTGCGGAGCGACGCGTCCGTGGTGTGATACGGCAGACCGCCGACAAAGATCTTGGTGAAAGTCGTGTCTTTCTGAATACTGGGATACATCGTTTCCAACGTCCCATTCACGAACTGATGTAAAAGCATCGGGGCGCTAAATTCAGTGCAGTGTAGATACGAAACGCGCGGGTTATAAATAAATATAAATAAACATAAATAACGAATGCCAGCTACTCTAACAATGTTTGCGAAGGCAGCGAGGTAGATAGTCCTTTGGCTTGGAAAAACAACTGTGGCTCCTGTTCTTCTCCGTCATGTGCCAAACTACTCCACTAGTCCATGACCGGATAAACAATGACGGCAGGTGACTGACTGACTGAAGCTC

Function

NR:

description
PREDICTED: calreticulin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131384 True 849 lncRNA 0.40 2 769483 786300

Neighbor

gene id symbol gene type direction distance location
CI01000021_00748689_00750893 AQP6, MIPB, MIPA, MIP coding upstream 18483 748141 ~ 751000 (+)
CI01000021_00699356_00722821 BAZ2A coding upstream 46506 699356 ~ 722977 (+)
CI01000021_00680850_00686621 NA coding upstream 82197 680850 ~ 687286 (+)
CI01000021_00591222_00592439 NA coding upstream 176551 590317 ~ 592932 (+)
CI01000021_00558429_00561268 SNAI1B coding upstream 207396 557795 ~ 562087 (+)
CI01000021_00822848_00831637 NA coding downstream 36548 822848 ~ 831680 (+)
CI01000021_00972210_01064592 SAMD10 coding downstream 184913 971213 ~ 1064715 (+)
CI01000021_01100408_01104630 NA coding downstream 314108 1100408 ~ 1104630 (+)
CI01000021_01129847_01154032 UCKL1B, UCKL1 coding downstream 343547 1129847 ~ 1154308 (+)
CI01000021_01219723_01256723 ZBTB46 coding downstream 433423 1219723 ~ 1257080 (+)
G115655 NA non-coding upstream 10721 758552 ~ 758762 (+)
G115653 NA non-coding upstream 12242 756980 ~ 757241 (+)
G115601 NA non-coding upstream 157097 611989 ~ 612386 (+)
G115581 NA non-coding upstream 196357 572728 ~ 573126 (+)
G115569 NA non-coding upstream 222901 546320 ~ 546582 (+)
G115673 NA non-coding downstream 442 786742 ~ 786958 (+)
G115674 NA non-coding downstream 970 787270 ~ 788025 (+)
G115699 NA non-coding downstream 61939 848239 ~ 852443 (+)
G115697 NA non-coding downstream 70035 856335 ~ 858020 (+)
G115681 NA non-coding downstream 81015 867315 ~ 883125 (+)
G115519 NA other upstream 285519 480530 ~ 483964 (+)
CI01000021_01332646_01333910 NA other downstream 546273 1331665 ~ 1333951 (+)
G116236 NA other downstream 1503517 2289817 ~ 2297195 (+)
G117237 NA other downstream 2451554 3237854 ~ 3243364 (+)
G117202 NA other downstream 2482844 3269144 ~ 3328233 (+)
G117484 NA other downstream 3169846 3956146 ~ 3957752 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021462 rbm38 coding NC_007134.7 CM002907.2 6586467 ~ 6632106 (+)