G116802


Basic Information

Item Value
gene id G116802
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 1764802 ~ 1769067 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU132704
TAGATGAAAAGCAGACTTTTATTAACAAACATTTATTTACACTGTGGTCAGCAAACACGTGTTGATGGACAGGCAGTCAATGTAGAACTATGGAGACCAAACACAGGAAAGAGTTACAAAAAGCGCTTAAAAACACCTGTAAAAAGAGAGAGCAATGAAGATGAGGGGAAAAGGTGTGATAAATCTATATCTTTTTTTTTATTTATTTTTTTTTTTTTTTTTATTATAACACTTATGCCGCAGACTATCATTGCTGGCTTATATTCAATATCCTAAAATCTACAATTACAAATGTACATGGATATTTTCAGAGAGTGGTATAAAATGCAATTTTCCTGTTCTTAGAGTTGAGATGCGATGTACAGAAGGACATGAAACACTAGGGGGCAGGATAGATCCACAGCCAATATGATGATCTAACAGAACATTGTACAAGATTACAGCAAACTGAAATTATTAAGCTGAAAGTGTTACATAAATTCATCAAATAAATGCTAAAAAAAACCCTTCCCCTAAACTCTTGCAATGTTTAAAGGAGTGGTTCACCTTAAAATTAAAACTGTCATCATTTACTCAGCCTCATGTTGTTTCCAAACATTTGATTTGATTTAACACAAAACAAGATATTCTGCAGAATGTTCACACTGCTCTTTTCCATACGACAAAAGCACAAAGCTGTCATATGACTTCAGATAACTTGGAACATAGAGCACAAGTCTATGCCTAAAATACAGGTTCCAATAGGGGAACTTATTAATCATATGAAAAAGAGCAACGTGAGCATTCTTCAAAAGTTCTCCTTTTGCACTCTAGGAGAAAAATAAAGACATACAGTTAAGAGCAATGGTGAACTATTCCTTTAAGAGCATGATGCGCCCAGTTCCTTTACCATCAGGCCACAAGAACCCAAAATGTTGTCAATACAGTACACAAATCTCGTGATATGAAACATCTGGTATTACAAGCAACTCAACAATGTAATTATGAAAGTTAGAAAATCTTGTTCATACTGACTTTTGCCCTTAACATCTCATTTTGGAAAGAAATACACAGCCCCTCTCTTCAAAACATGTCATACACACTATGATACATGTAACGTTGCATGTCAGGTCAGTCAGTTGTGCTTTGAGGTTTATGTTTCCAGTAAACAGTTACAGTAGCTCTGCATCTACAGTGAAAGACATTGACAGCTACTCAACCGTTGTCATATTCATATAAAGACATGCTGACGATTTGTTCACAAACAACTGATATTTGATTACAAGCACCATTCAAATGAAAGAACCACTATCTGTTTCATAATACCAGCCAGTCCTATAATAATAATGAAAAACAATAGTATGAGGTTATGTAGTATATTGTACTGACTATCGGAGGATGCCCAGACTAGTTTGATGTTAGGTCTAAAGGCTGATTATACAAATACATTGTGCAATAAATGATGATTATTAACATTTAAAAAATACTGATGGGCATGTACAGTGACCCCAAAATGTTTGAACGTCACACTTAAAATGCACAAATTCCATTGCATTAGATACAAAATATTAAACCAAGAAGCATCTGCAAACAAATGAACCACTTTAGCAAGGTGATTTTCAATCACACTTAGAAGAAAAGGATCTATATAGAAACTTAAATGATTCTGTCAGTCGCTTCATATATAGAACCACTTACGGGTTCTAACCATGGATCATTTTGTGGAATTAGTTTTAATTAATTTTGTTTTAATACATTTTTTTATTTCAATTAAATGTTATGAACTAAACAGCTCAGTATGAATTAAACAGCTAAAACTTACTTTATCACTAGAAAAAAAAAAATTGAAATAACCCATTAAACATGAAAGTATTATGAAGTTATTTATTTCTCCTTATACACTCAAAAAAAAAAAAAAAAAAGGTTCCAGAAGGTGTTGTTCACAATGATGCCATCAGTGTTGGGGGAAGTTACTTTTACAAGTAATGTATTACAATATTGCATTTCTCCCTTAAAAAATAACTAATTGCATTAGTTACTTTTTGTGTAATGTTTTACGTTACTTTTGCATTACTTTTTCTCATGGGCTGGGCTTGCTTGTTTGTTTTTTAATAACAAAAAAAGTTCTATTTTTGGCAAATGTAAAGGTCTTTTCACACCAAACGTTTTTGCTTATTTGTATGGTTGAATTGGATCATTGGTCAGCAGCAAAGACATTGGGTAATAAAGTGAGATTTATAAATATACATAGAGTATATTTGTGTTATTTAACATATTTAATTATTGAAGGTTTGCATAAATTTCTTAGTTTGCATTTCACTGTTTTTATTCATTTTGAGGAATACATTTACTCCTGATTTCTCTCAACATGGGGACAGGAGAGCTGTCAGTCAATAAATGGGAAAACAAAGTAACTTGCGTTACTTATTTGAAAAAGTAATGTTACTTTACTAGTCACTTGAAAAAAAAAATCTGATTACGTAACCCGCATTACTGAGGCGAAACTGCGTTCCCTTGCTTTATTTGAAAAAGTAATGTTACTTTACTAGTCACTTCAAAAAAAATAATCTGATTACGTAACCCGCGTTACTGAGGCGAAACCGCGTTCCCTTGCCTTATTTGAAAAAGTAACTCAGAAGTAATGTGTTACTTTACTAGTTACTTGAAAAAAGTAATCTGATTCGTAACCCACGTTACTGAGGTGAAATTGAGTTCCTTTGCCTTACTTGTTTGAAAAAGTAACTCAAAAGTAATGTGTTACTTTACTGGTTACTTGAAAAAAGTAATCCGATTACGTAACCTGTGTTACTGAGGGGAAACCGCATTCCCTTGCGTTACTTGTTTGAAAACGTAAATCAGAAGTAATGTGTTACTTTACTATTTGAAAAAAGTAGTCTGATTATGTAATCCACGTTACTGAGGCAAAATCGCGTTCCCTTGTGTTACTTGAAAAAGTAAAATCAGAAGTAATGTGTTACTTTACTAGTTACTTGAAAAAAGTAATCCGATTACATAACCCGCGTTACGGAGGTGAAACCGCATTCCCTTGCATTACTTATTTGAAAAAGTAAAATCAGAAGTAATATGTTATTTTACTAGTTACTTGAAAAAAGTAATCTGATTACGTAACCTGCGTTACTGAGGCTCATGCCACTGGAACATTTTTGTGGAATGGAAAAGTTTTTTTTAAGTTCTATAAAGAACCTTTATTTTTAAGAGTGATATGGAACCTCTCTGGCATAAAGGGTTGTTTAATATTGAGTCAAGAACCCTGGTGTTCTATACAGAATCCCTCTGAACCCTCTGAAGTGTGTATAACCTATATTTGATCTAATGTCATGACATTCATACATTGTTTAGTATGATTTGAGTGTCTAAATACAGTTATTTTGGGATCATTGAATAAAACTAGAGCAAAAAACTAAAACTGAATCTGACAGTGAACCATGAGAATCATACATCACACTATGACATAAAACAACTTTCAGAACAGCTCTAATTCTTTCTTGTATTTGTATTTTATGCTTCCTTTGCTTCTATTTTTGACTACCACAGGAGTTTAGCTCGCTTTGTCTTATATTTTCCGGCCACACCCTCTGTCCTCCTCTCGGCTCCCTCCTCTGTTTTACTGTGCAAATCCTGTGTGAAGGTAAACAGCAGCACACAATGGCCCTCCTCACATACACAAACAGACCTGGAACTCTGTGAACCTCAACATCTGAACTCCCACCAAATAACTCAATGCACGGACCACACACAACACAGGTCAAAATACAGGACCTTTTTGTTTAGATATGCTTTACAGCCACTTGTAAGAGCGCCTAAATGAGGCGGCTGGAACAATTTTCCAGAGCATCTGATGGAGCGACTGTGTTTTTTCCAGAGCTGTGAATCTTCAACACTTCTTCCAAACCAGAATGGGCTGATTTAGGATGAATTAGGCAGGTGTTTTAAACAGAGGAGAGGCAGAGAGGAGGAATGGGCAGAACGGCTCCTCTTCAGGACACGCTTTCATTTACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132704 True 3999 lncRNA 0.34 2 1764802 1769067

Neighbor

gene id symbol gene type direction distance location
CI01000021_01735408_01735712 NA coding downstream 29090 1735263 ~ 1735712 (-)
CI01000021_01626896_01630224 LIME1 coding downstream 134578 1626862 ~ 1630224 (-)
CI01000021_01610076_01611493 NA coding downstream 153042 1610025 ~ 1611760 (-)
CI01000021_01535275_01607587 NA coding downstream 157215 1535275 ~ 1607587 (-)
CI01000021_01494163_01497702 DDX23 coding downstream 267100 1493783 ~ 1497702 (-)
CI01000021_01791577_01796792 SLA2 coding upstream 22330 1791397 ~ 1796792 (-)
CI01000021_01805603_01824428 NDRG3, NDRG3B coding upstream 36303 1805370 ~ 1824428 (-)
CI01000021_01910328_01917171 NA coding upstream 140294 1909361 ~ 1917747 (-)
CI01000021_01922936_01956597 NA coding upstream 153652 1922719 ~ 1956597 (-)
CI01000021_02005120_02042997 SULF2B, SULF2 coding upstream 235759 2004826 ~ 2043167 (-)
G116819 NA non-coding downstream 27335 1736952 ~ 1737467 (-)
G116771 NA non-coding downstream 250273 1514326 ~ 1514529 (-)
G116763 NA non-coding downstream 278575 1485938 ~ 1486227 (-)
G116760 NA non-coding downstream 280179 1484079 ~ 1484623 (-)
CI01000021_01475454_01477318 NA non-coding downstream 282413 1475400 ~ 1482389 (-)
G116833 NA non-coding upstream 17151 1786218 ~ 1786973 (-)
G116834 NA non-coding upstream 18232 1787299 ~ 1787682 (-)
G116805 NA non-coding upstream 41779 1810846 ~ 1811339 (-)
G116847 NA non-coding upstream 418511 2187578 ~ 2187818 (-)
G116848 NA non-coding upstream 418797 2187864 ~ 2188492 (-)
G116730 NA other downstream 401998 1361878 ~ 1362804 (-)
G116856 NA other upstream 440854 2209921 ~ 2210496 (-)
G116893 NA other upstream 562247 2331314 ~ 2334316 (-)
G116997 NA other upstream 943718 2712785 ~ 2713247 (-)
G117683 NA other upstream 1122793 2891860 ~ 2892359 (-)
G117893 NA other upstream 1274952 3044019 ~ 3044787 (-)

Expression


Co-expression Network