G116889



Basic Information


Item Value
gene id G116889
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2328063 ~ 2329874 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU132794
AAGCATTTATTGTAGCCAAAATGCACTTTTAAAAAAATGGGACAATTTGAGAAAACTTGGAAATCACAAGTTTTGCAGAGTATATTACGTTAATGATTCAACTATACCCAACAATAATAAATAAAAATTTAGTAAGTAACCAGTATAATGAATTTGTGTGCAAGGGACAACAATCTGTAAAACAATCTGCACGATTTTACAAAAAAGTTTGGGCTCAGACATTAAAACTTTAATTTTTGACATTAATAACTATATAGTACTGGTGGAATGATATTGTTTTCTAAATATATTCAAAATCATTCAATAAAAATGCTCTATATGAAATATAAAGGCATCATTTGAGTTAAAATGTGTAGTGTTATTTTGCACTGCTGAAATGAACAGATTGACGTTTGTGCACAAGTTATTTAAAATCACTCTGAGCTCAGTAACAAAATATATATTTAAAACTGTACTTTACAGCATCATAAAGACATAACATTACTATTTGAAGGCTTCTGTTGTAGCAGTATCTGACAATTTCATTTATAATTTACACCAAAAGTGGAAATTCCCTTTAATATAAGAATTTAAGAATACTTTATCCTTCACTGAAAAGGCAAACCAGTCCAAGGCAGCTGAATGTAAACAACACAAGAGTCGACAGCATCGCTTAATACTTTCCCATGTCTATTTAAAATAATGAGTGCTGAAATGAAGGCTGGTTGATTCAAGCCTACTAAAGAGTAAGAAAAATCTCTGTGAAATTCATGACGGCTGAAAATAAATGGAGTCACACCAAAACCCGATTTGTAGTTAGTTCATAATACTTAATACATTAAGTAATGTTAACAAACTGAGTCTCATTGTAAAGTGTTACCAACTAAAGAATAAGGCTATATTAAAAACTATTGAAATGTGCCCATGAAATGCATGTGTTTTAAAGTGTAGAGTTAGCATTATTTCCACAGGTTTCCTTAGTAACCTAATCTTACATAGTGCTCTCAGAAACATCCCTCATATTCATATTAAAAAAAGAACCCTGAATGCTTATGGGACATCTTCACTTTTACCCTTAGCTCTGACCGACCCCTCGCTGTCCTCGATGCTCTCTTTAATGAGACACTCCTTTAGGTTGGGCTGGTTCCCTATATCAATCCCCAGCTCCTGGATCTCCTGGAGAAGAGCTTCCCAGCGCCTCTTGTCCTTCGAGATCTTCCAGGACAGCCTGACATTGGATTGCAGGAGGGGGATGAGCAGAGGGTGCAACTGGTGCTGCTGCAAAGCTTCCTGGGAAGGCGCTAGATCCTGCAGGGCTCGGTCGCAGTGTTCCTGAGCCTCACTGAGTTGGTCTAGTTCTTGGAAGCAGGTGACCAAAGCGGAGAGCGTGAAGAACCAATGAGCCCTCTGAAGCTGGTTGAGCTGCAGGATCTGATGGCATCCTAACTTCTCCTGGAGTCTTAGAGTGTTGAGAAGAGACCCCAGGGCGTCTTGGTGACGGCCCACTCGCATCAGCATCTGGCCAGCACGCAGATCACCCAGGTAGAAGAACTCAAGGAACGTAGGTGTGGTCCGCAGTTCAGGTAGGGAGTGAAGGTGGGTCAGGTACTGCTCGAATGCCCGGCTGCGCTTGGCAATGGTCTCGGCGGCGAAGTTTTTGCGCAGCTTCTTGCGAGGGAAGTACACGCCATCCATCTCGTCTCCGTGACGCCGTCGCAAGCGGCTGTGTAGCCGTTCGAAGTCAGTGTAGCGCCGCGTGATGACAGCGGGAGTTTTGTCAAACGTGCCAGAATGGATGACATGAATC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU132794 True 1786 lncRNA 0.41 2 2328063 2329874

Neighbor


gene id symbol gene type direction distance location
CI01000021_02317457_02320931 HAUS8 coding downstream 6400 2317457 ~ 2321663 (-)
CI01000021_02309119_02315738 NA coding downstream 12325 2309024 ~ 2315738 (-)
CI01000021_02299075_02305974 MRGBP coding downstream 22089 2298424 ~ 2305974 (-)
CI01000021_02290326_02297117 EEF1A1, EEF1A2, EEF1A1A, EEF1A2.S coding downstream 30946 2289943 ~ 2297117 (-)
CI01000021_02191178_02193192 NA coding downstream 134715 2190044 ~ 2193348 (-)
CI01000021_02335864_02337990 NA coding upstream 5489 2335363 ~ 2341260 (-)
CI01000021_02386235_02398978 PIGT coding upstream 55712 2385586 ~ 2398978 (-)
CI01000021_02458161_02471710 NA coding upstream 128280 2458154 ~ 2471710 (-)
CI01000021_02492524_02493429 PPP1R3DA coding upstream 162263 2492137 ~ 2493429 (-)
CI01000021_02503590_02509554 TTLL9 coding upstream 172694 2502568 ~ 2509554 (-)
G116872 NA non-coding downstream 76778 2250802 ~ 2251285 (-)
G116848 NA non-coding downstream 139571 2187864 ~ 2188492 (-)
G116847 NA non-coding downstream 140245 2187578 ~ 2187818 (-)
G116805 NA non-coding downstream 516724 1810846 ~ 1811339 (-)
G116834 NA non-coding downstream 540381 1787299 ~ 1787682 (-)
G116891 NA non-coding upstream 352 2330226 ~ 2330431 (-)
G116900 NA non-coding upstream 809 2330683 ~ 2331076 (-)
G116957 NA non-coding upstream 205194 2535068 ~ 2535384 (-)
G116962 NA non-coding upstream 262877 2592751 ~ 2594183 (-)
G116856 NA other downstream 117567 2209921 ~ 2210496 (-)
G116730 NA other downstream 965259 1361878 ~ 1362804 (-)
G116893 NA other upstream 1440 2331314 ~ 2334316 (-)
G116997 NA other upstream 382911 2712785 ~ 2713247 (-)
G117683 NA other upstream 561986 2891860 ~ 2892359 (-)
G117893 NA other upstream 714145 3044019 ~ 3044787 (-)
CI01000021_03902018_03931315 ACSS2 other upstream 1507548 3901897 ~ 3932508 (-)

Expression



Co-expression Network