G117161


Basic Information

Item Value
gene id G117161
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2889239 ~ 2889861 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU133139
CGAGAATGTCTCCCAAGCATTTTAGGTGTTCTGTAGCTGGATGGATTAATCCACATAGCTCTCTCCATTTACTCCCTAAATCTGAGCCGCTGAAGACGAGGTGGATTAATTTTGCTTTTGAAGAAAATGTTCCCTCAACTCTACCGAAATTCGTTTATGTCTGCGCAAATCATTTCACACCGGACTGCTTTGTGAACGAATGTCAATACAAAGGGACAATTCAAAACAAAGGTTGAGCTAAAAATTTGTTACTCAAGGATAGATCAGTAAACTGTTCGTGATCCAGCTTAAAGTCTCCAGAGTGATACTGGATACGGCAGTAATGAAGGTGAGAGCACTTTATTACAGTTCATCGGAGTTGATTTACGGATATAAAGTTTACCAGTTTATTAAGCACTCGAAAAGGCATAAGGTCTTTATATATTTGTTTACTGTTAGTTGTAACGAGTGTTTCTGTGTACTTCGCTGTGTATGTTGATGATAATGCAAGGGAGAGAGAGTGAGTTTACGGATAATATTTTAATGTTTTATTAAGCTCTTACAGTGATTTTCTAGACTGAAAACGGACACTTCATCTTTTGTGTGAAGTACAATAAATGTCATAAAACTCATCGGTAAAGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133139 True 623 lncRNA 0.38 1 2889239 2889861

Neighbor

gene id symbol gene type direction distance location
CI01000021_02877008_02877864 NA coding upstream 10416 2876517 ~ 2878823 (+)
CI01000021_02581650_02610697 NA coding upstream 277632 2581650 ~ 2611607 (+)
CI01000021_02495559_02501217 FAM217B coding upstream 387512 2495559 ~ 2501727 (+)
CI01000021_02402058_02447882 PHACTR3A coding upstream 441357 2401679 ~ 2447882 (+)
CI01000021_02378299_02383589 NA coding upstream 505479 2378044 ~ 2383760 (+)
CI01000021_02930718_02985342 CNTN3A.2 coding downstream 40857 2930718 ~ 2985342 (+)
CI01000021_03044076_03086657 NA coding downstream 154215 3044076 ~ 3086657 (+)
CI01000021_03101146_03115161 RYBPA coding downstream 211092 3100953 ~ 3115468 (+)
CI01000021_03119361_03125084 EIF4E3 coding downstream 229500 3119361 ~ 3126781 (+)
CI01000021_03164405_03179692 FOXP1A coding downstream 274544 3164405 ~ 3179949 (+)
G117138 NA non-coding upstream 18912 2869955 ~ 2870327 (+)
G117137 NA non-coding upstream 21111 2867811 ~ 2868128 (+)
G117075 NA non-coding upstream 24084 2820589 ~ 2865155 (+)
G117031 NA non-coding upstream 49322 2818461 ~ 2839917 (+)
G117073 NA non-coding upstream 72546 2812483 ~ 2816693 (+)
G117164 NA non-coding downstream 2246 2892107 ~ 2892529 (+)
G117182 NA non-coding downstream 134171 3024032 ~ 3024233 (+)
G117239 NA non-coding downstream 349474 3239335 ~ 3299281 (+)
G117202 NA non-coding downstream 379283 3269144 ~ 3328233 (+)
G117260 NA non-coding downstream 403405 3293266 ~ 3293887 (+)
G116236 NA other upstream 592044 2289817 ~ 2297195 (+)
CI01000021_01332646_01333910 NA other upstream 1554830 1331665 ~ 1333951 (+)
G115519 NA other upstream 2405275 480530 ~ 483964 (+)
G117237 NA other downstream 347993 3237854 ~ 3243364 (+)
G117484 NA other downstream 1066285 3956146 ~ 3957752 (+)
G117493 NA other downstream 1143139 4033000 ~ 4035676 (+)
CI01000021_04886787_04893309 PLAGL2 other downstream 1952872 4886337 ~ 4893474 (+)

Expression


Co-expression Network