G118062


Basic Information

Item Value
gene id G118062
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 3562589 ~ 3566446 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU134142
CTTTAGAAAAGCATTATATGAATTCACTGAAGGTGTCGCACCACCCAACATGAGCTTCCGAGGTCTGCAATCTTCACCGTTATATTATCCAAGTTTCCAGGTTTTCCAGCTGCTCCAGGATCCTGGAGTATTGTGGTTTTAATAGCTGAAGTGTGCATTTGTAGCGTGCCCCCTGGAGGATGAGGTGGGGACTGCGGTGTGAGACACAGCAGTATGTTCTCGGGCTTGATGTCTGTGTGAATGATCTTACAGTGTTGGTGAAGATACTCCAGACCTTCAAGCACCTGAGTGATGACGTGTTTAACACAGGTGAGAGAGAGACCTGGACTACCAAAACACACCTGCCAACAGCGCAAGTCCGGCCCCAGCAGCTCCAACACCAAACAAATATGGATCCCGTTCACACCAGCTATCTTAAACTCATCCAGTAATTGCACTATACGTCTTTTAAGAGGGTTACGGGCTGTGGGACCACTGGCACATCGCAGTAATGTCAGTTCATCTTGGCCAGCTTGAGTGAATCCAGCTCCGCTCTTTAACACCTTCACCGCCACATGCCTGCCTGACCTGAGGTCAATGCAGAGCCATACAGTAGAGAAATAACCCCAACCCAGCTTTGACAGAACCTTGTATCTCTTATTAAACACATCTCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU134142 True 654 lncRNA 0.48 6 3562589 3566446

Neighbor

gene id symbol gene type direction distance location
CI01000021_03438153_03448377 NA coding downstream 114212 3436760 ~ 3448377 (-)
CI01000021_03324720_03328120 KRT18 coding downstream 233135 3324355 ~ 3329454 (-)
CI01000021_03319954_03323293 NA coding downstream 239249 3319110 ~ 3323340 (-)
CI01000021_03267771_03288743 EIF4BA, EIF4B coding downstream 273846 3267302 ~ 3288743 (-)
CI01000021_03246184_03250332 NA coding downstream 312257 3246011 ~ 3250332 (-)
CI01000021_03572797_03577241 SLC16A7 coding upstream 6323 3572769 ~ 3577582 (-)
CI01000021_03748559_03755297 ADRM1.S, ADRM1 coding upstream 181907 3748353 ~ 3755297 (-)
CI01000021_03760052_03774483 OSBPL2, OSBPL2B coding upstream 193270 3759716 ~ 3774483 (-)
CI01000021_03902018_03931315 ACSS2 coding upstream 335451 3901897 ~ 3932508 (-)
CI01000021_03973725_03974969 NA coding upstream 406993 3973439 ~ 3974969 (-)
G118008 NA non-coding downstream 115653 3446345 ~ 3446936 (-)
G117996 NA non-coding downstream 144785 3411906 ~ 3417804 (-)
G117985 NA non-coding downstream 187235 3375033 ~ 3375354 (-)
G117984 NA non-coding downstream 187645 3374624 ~ 3374944 (-)
G117974 NA non-coding downstream 198335 3364048 ~ 3364254 (-)
G117746 NA non-coding upstream 41476 3607922 ~ 3609025 (-)
G117850 NA non-coding upstream 137803 3704249 ~ 3705697 (-)
G118158 NA non-coding upstream 258063 3824509 ~ 3825969 (-)
G118202 NA non-coding upstream 583106 4149552 ~ 4149784 (-)
G118205 NA non-coding upstream 587387 4153833 ~ 4154054 (-)
G117893 NA other downstream 517802 3044019 ~ 3044787 (-)
G117683 NA other downstream 670254 2891860 ~ 2892359 (-)
G116997 NA other downstream 849342 2712785 ~ 2713247 (-)
G116893 NA other downstream 1228273 2331314 ~ 2334316 (-)
G116856 NA other downstream 1352093 2209921 ~ 2210496 (-)
CI01000021_04035411_04049515 CCM2L other upstream 478838 4035189 ~ 4049592 (-)
G118639 NA other upstream 1183651 4750097 ~ 4767372 (-)
G118801 NA other upstream 1587445 5153891 ~ 5154291 (-)
G119215 NA other upstream 1958409 5524855 ~ 5530926 (-)

Expression


Co-expression Network