XLOC_000825 (si:dkey-1c7.2)


Basic Information

Item Value
gene id XLOC_000825
gene name si:dkey-1c7.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 57787642 ~ 57793729 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001317
AACAGGAGAGTTTGAGGAGAGCTGAATCTACTAATGACAGAAGATCAGTGAATAAGAGAGAAGAATGAAGATCATCTGGACTTTCACTCTGCTCATGATTCCTGGTGTGTTGAGCTCCATCAGTGTGACAGGATATTCAGGAGGCGGAGTCACCATCACATGCAAATATGATGAACAATATAAGACAAATTCAAAGTATTTTTGTAAAGGAAAGTATATACCAACAGGGCCAGACCTCATCAAGactgagattaaaaataaatgggTAAAGAAGGATAAATACTTTCTGTATGACAACACAACAGCAGCAGTTTTCACTGTAACCATCATAAATCTGACAGAGAAGGATTCTGGGACTTACTACTGTGGAGTTGATATACATTACCATACAGATATCTACACTGAAGTGAATCTGAAGGTCATCACAGCTGCTTGTTGTCAGAAGAGCATCAGTCTATCAGCTGCAGCAGGAGGATCCGTTAACATCAGCTGCAGATACCCACAATCCCACACCGCTGATGTCAAGTTCATCTGCAGGAGATCTGGAGCCGATCTCTGTGCTGAAGAGACGCGGTCTGAGGAGGAGAGCGGAGGAAGAAAAGCTGAGGGAAAGATCCAGCTGTATGATGACAGAGAAGAGCAGCTCCTGACAGCCACCATCAGTCATGAGAGTCCAGAACATTCAGCTGAATACTGGTGTGGAGTTCAGTCTGCAGGACACAAGAGCTTCATCACACGAGTCTTCATCAACTTCACTGATGCAGAAACACCTCCATCATCTCCACCAACATCATCAACATCTCTATCCAAATCAGCTTCATCTCCACCAAATTCATCTTCACCACcaccaccctcctcctcctcagcaTCATTATCTGATTCTTCTTCCTCATCAGCCAAAACTTCACTGAGTTCATCTCCCAAAACTTCTCCATATGCTCTCATACCGGCATCTCCAAACACATCAGCAGGCTCTTCTCTGATCATCCCTCTGGTTCTGGTTGTTCTGCTTCTGATCATCGCTGCTCTCTTATTACTGTTTCTCTATAAGAAGCACCAGACCAAAGGCGGTGATTCTCAAACTGGACCAGGGAACACTGCAGTGGTTTCTCACACTGCTTGTGATTATGAGGAGATTAAAGACACTCACAAACAATTACCCACAAACCCCTCTGAGTCTTCTAGTGCTGTTTACTCCACTGCTGAATTACCCACAAAACCCTCTGAGTCTTCTAGTGCTGTTTACGCCACTGCTCAGTTACCCACAAACCCCTCTGAGTCTTTTAGCTCTGTTTACGCCACTGCTCAATTACCCAATAACCCCTCTGATTCCTGTCTTTACTCAACAGTTCAGGAAGCCTCTGGTGACTCTCAGATCTGCATCTCATCTGCTGAGGGTCTGAATTACTCAGTGGTGAATTTCCATAAGACACCAGACTTGAGGAATAGTCAAGAGTGCAGTGAATATGCTGCTGTCAATCATAATTTTACTGCTTGAAGAGACTTGAATgaacagagtttttttttgttatcttgTTTTTGGCATTAAGTTTCCATGTTCTTGTGTTAATTGCTTTTCTTGTAAATTACTTGTGTTAACTATTTAATGCTGCATTTAAAAcataggctgcgtccaaaatcgcatacttctatactatatagtatgctaaaaaagtatgtgagccgagtagtatat

Function

symbol description
si:dkey-1c7.2 Predicted to enable transmembrane signaling receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104859

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001317 True 1696 mRNA 0.43 7 57787642 57793729

Neighbor

gene id symbol gene type direction distance location
XLOC_000824 si:dkey-1c7.2 coding upstream 7794 57774454 ~ 57779848 (+)
XLOC_000820 si:dkey-1c7.1 coding upstream 24294 57724157 ~ 57763348 (+)
XLOC_000823 LO018597.2 coding upstream 37275 57744400 ~ 57750367 (+)
XLOC_000821 LO018597.1 coding upstream 44249 57741577 ~ 57743393 (+)
XLOC_000822 NA coding upstream 45206 57742079 ~ 57742436 (+)
XLOC_000826 NA coding downstream 133164 57926893 ~ 57931592 (+)
XLOC_000827 si:dkey-156m2.3 coding downstream 173102 57966831 ~ 57980061 (+)
XLOC_000828 si:ch211-114l13.12 coding downstream 188094 57981823 ~ 57991025 (+)
XLOC_000829 BX469930.2 coding downstream 209886 58003615 ~ 58017364 (+)
XLOC_000830 trim35-1 coding downstream 245822 58039551 ~ 58049515 (+)
XLOC_000819 NA non-coding upstream 75406 57710298 ~ 57712236 (+)
XLOC_000818 NA non-coding upstream 222406 57541116 ~ 57565236 (+)
XLOC_000815 NA non-coding upstream 351525 57408667 ~ 57436117 (+)
XLOC_000837 BX927298.1 non-coding downstream 366422 58160151 ~ 58173589 (+)
XLOC_000864 NA non-coding downstream 784190 58577919 ~ 58585132 (+)
XLOC_000865 NA non-coding downstream 792624 58586353 ~ 58595767 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01146038_00000737_00001963 NA coding CI01146038 null 461 ~ 1963 (-)