G117435


Basic Information

Item Value
gene id G117435
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 4242624 ~ 4244078 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU133448
AGCAGTTAAGGGTTGAGTACAGTGTGAAAAGCCCTTCTGGAAGCCGCAGAAAAATTAAATCTCTTGGCAAGCTGTAAATGAATAATAACACAAACATCTTTATTATTATCATTATAGTCATATCTTCTCTTTAAAAAACATTCAAAAAAATCTGCAACCAAGTCAGAGGTTATGGAATATTACAGACGGGTTCTTGATTAATTCATCTCCGGCAATGAGCTGGCCTGGATTAAAAGGGACCTCAAGTCGGCCCCAACCACAACCTGAAGAGGGCGTCCTGCTATGGCACCCAAGGGCGAGGGGAGGTTACACAGTAATGGTCACAGACTTTGGGGAAAAAAAGAAAAAAAAAACAAAAAAAATTGGTCCAGAAATCCATAAACATACTCTTTAAAACATAACTTGATTTATTTTAATACAAAATATAATGCTAATGTCAATAAATAAGTGTCCATAGAAGTCCATGAGTCAGGGACCGATCTCACTGCTGTATGTCATGGCACTGCAAATCTCACAGAGTGACCGGAGAGAACATAAGAAAGAGTGAGGGAAGGCCAATGAGATGGCGAGACCTTGAGGCTAGCATGTGAGGTGACAAAAAAACCAAAACATATTGAAACAAAGACCGGCAAGACCATTTGATGATGACATAATGCATATGATGGAAACACATCACTTACTGACAGACTCACTCCTCCGCGCAAATGTCCTTTGTTTGAGACTGTTAGAAGGCTAGATTAATTTTGGCACCTTAAAGAAATGTATGTAAACATAAGCAGCTCTAGGTCACAGTCCCTGTCTCAAATACAAGTTTGTGAAAGTCTGTCTGTTCTGTGCAGCTGTTGAAAGAGGACAGTTGCTAGTGAGTGATACAACAAATTCAAACACTCTTATAACAAAGCACGTGTTGCGATGCATTCATTTTGTGTTCTTTCTATATGCATGATATATTGGTACCATATTGGTTATTGATGGAAGCCATTGACTTCCATAGTATTTTTTTTTCCTACTATGGAAATCAGTGGCTACCGTCAACTGTCTGGTTACCAACATTCTTCTTTTGTGTTCAATGCTGGTTTGGAACAACTTGAGGCTGCATAAGTGATGGCAAAATTTTCATTATTGGGTGAACTATCCCTTTAATGTGATATTTGTCAGTCATAAATTAAACAGGTAAGACTTCTCTAATAGTACTAATAAACTCAATGTGCTTTAAATACGCAATAACCAGATTTACAGATCAATAAATCCAGTTTGTTTCAATCTGATACATTTGAATGAACCATGTTCATATTTCACAATTAACAGATTATGCAGATTCTAAGCCATTTGAATAACTGCATTTTGAAAATGTTATTAATTTTAATTAACCCTTGTGCTGTGTTGAAAACCCAATAACACTTGTGGTGTTCCCGGTCAAAAATGACCGGCCTGCAAAAAATAGCTTATAAATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133448 True 1455 lncRNA 0.37 1 4242624 4244078

Neighbor

gene id symbol gene type direction distance location
CI01000021_04219242_04237829 NA coding upstream 4617 4219187 ~ 4238007 (+)
CI01000021_04087145_04091630 NA coding upstream 150798 4085974 ~ 4091826 (+)
CI01000021_03793387_03846383 NA coding upstream 396241 3793387 ~ 3846383 (+)
CI01000021_03640760_03747887 LAMA5 coding upstream 494737 3640760 ~ 3747887 (+)
CI01000021_03617827_03624592 MAPRE1B, MAPRE1 coding upstream 617720 3617827 ~ 3624904 (+)
CI01000021_04259458_04263656 NA coding downstream 15079 4259157 ~ 4264106 (+)
CI01000021_04436103_04476829 OPRL1 coding downstream 191749 4435827 ~ 4477311 (+)
CI01000021_04576127_04585164 NA coding downstream 332049 4576127 ~ 4585311 (+)
CI01000021_04614553_04621970 NA coding downstream 369687 4613765 ~ 4622428 (+)
CI01000021_04755472_04758504 NA coding downstream 511394 4755472 ~ 4758654 (+)
G117587 NA non-coding upstream 2785 4239627 ~ 4239839 (+)
G117583 NA non-coding upstream 33031 4209172 ~ 4209593 (+)
G117580 NA non-coding upstream 38473 4203915 ~ 4204151 (+)
G117568 NA non-coding upstream 71445 4170966 ~ 4171179 (+)
G117566 NA non-coding upstream 78024 4164335 ~ 4164600 (+)
G117608 NA non-coding downstream 52667 4296745 ~ 4297329 (+)
G117638 NA non-coding downstream 149370 4393448 ~ 4393779 (+)
G117641 NA non-coding downstream 157207 4401285 ~ 4401498 (+)
G117644 NA non-coding downstream 162886 4406964 ~ 4470905 (+)
G118374 NA non-coding downstream 354470 4598548 ~ 4598759 (+)
G117493 NA other upstream 206948 4033000 ~ 4035676 (+)
G117484 NA other upstream 284872 3956146 ~ 3957752 (+)
G117202 NA other upstream 914391 3269144 ~ 3328233 (+)
G117237 NA other upstream 999260 3237854 ~ 3243364 (+)
G116236 NA other upstream 1945429 2289817 ~ 2297195 (+)
CI01000021_04886787_04893309 PLAGL2 other downstream 598655 4886337 ~ 4893474 (+)
G119701 NA other downstream 2556066 6800144 ~ 6860606 (+)

Expression


Co-expression Network