Gene
RNA
| Item | Value |
|---|---|
| gene id | G119193 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000021 |
| NCBI id | null |
| chromosome length | 7014339 |
| location | 5425587 ~ 5425973 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU135370 | True | 387 | lncRNA | 0.29 | 1 | 5425587 | 5425973 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000021_05414459_05416813 | NA | coding | downstream | 8774 | 5413385 ~ 5416813 (-) |
| CI01000021_05355570_05361307 | NA | coding | downstream | 62737 | 5355501 ~ 5362850 (-) |
| CI01000021_05189721_05190994 | NA | coding | downstream | 234502 | 5189642 ~ 5191085 (-) |
| CI01000021_05170884_05171489 | NA | coding | downstream | 253801 | 5170833 ~ 5171786 (-) |
| CI01000021_04989798_04995415 | GATA5 | coding | downstream | 429123 | 4989720 ~ 4996464 (-) |
| CI01000021_05488457_05506440 | SAMHD1 | coding | upstream | 61694 | 5487667 ~ 5506440 (-) |
| CI01000021_05519376_05522107 | MTG2 | coding | upstream | 92297 | 5517230 ~ 5522107 (-) |
| CI01000021_05533611_05540742 | NA | coding | upstream | 106690 | 5532663 ~ 5541008 (-) |
| CI01000021_05588398_05594436 | NA | coding | upstream | 162371 | 5588344 ~ 5594436 (-) |
| CI01000021_05638487_05640144 | NA | coding | upstream | 211927 | 5637900 ~ 5640144 (-) |
| G119191 | NA | non-coding | downstream | 1843 | 5423545 ~ 5423744 (-) |
| G119189 | NA | non-coding | downstream | 5864 | 5419493 ~ 5419723 (-) |
| G118953 | NA | non-coding | downstream | 83519 | 5341839 ~ 5342068 (-) |
| G118949 | NA | non-coding | downstream | 84998 | 5340358 ~ 5340589 (-) |
| G118940 | NA | non-coding | downstream | 88134 | 5337246 ~ 5337453 (-) |
| G119194 | NA | non-coding | upstream | 137 | 5426110 ~ 5426355 (-) |
| G119201 | NA | non-coding | upstream | 19226 | 5445199 ~ 5445631 (-) |
| G119212 | NA | non-coding | upstream | 96657 | 5522630 ~ 5522926 (-) |
| G119253 | NA | non-coding | upstream | 120048 | 5546021 ~ 5546227 (-) |
| G118801 | NA | other | downstream | 271296 | 5153891 ~ 5154291 (-) |
| G118639 | NA | other | downstream | 658215 | 4750097 ~ 4767372 (-) |
| CI01000021_04035411_04049515 | CCM2L | other | downstream | 1375995 | 4035189 ~ 4049592 (-) |
| CI01000021_03902018_03931315 | ACSS2 | other | downstream | 1493869 | 3901897 ~ 3932508 (-) |
| G117893 | NA | other | downstream | 2380800 | 3044019 ~ 3044787 (-) |
| G119215 | NA | other | upstream | 98882 | 5524855 ~ 5530926 (-) |
| G119267 | NA | other | upstream | 187469 | 5613442 ~ 5613989 (-) |
| G119233 | NA | other | upstream | 355101 | 5781074 ~ 5782246 (-) |
| G119967 | NA | other | upstream | 1376882 | 6802855 ~ 6807625 (-) |
