G119233


Basic Information

Item Value
gene id G119233
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 5781074 ~ 5782246 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU135414
CGGAATTCTAATAAAGAAGAAGAAGAAGAGAGCTAGTTCAAGACAAGCGTTTGTCGTTAAAACATATATAATTTTAAATTCTTTTTAGAAAATGACCGATCGTTTCACTAGATAAGACTCTTATTCCTCGACTGGGATCGCGTAGAGCTCTTTGAAGCTGCACTGAAACTGTAATTTTGACCTTCAACCGTTTGGAGTCCACTGAAGTCCACTATAAGGAGAATAATCCTGGAATGTTTTCATCAAAAACCTTAAGTTCTTTTCAACTGAAGAAAGAAAGACATAAACATCTTGGATGACATGGGGGTTGCTGCGCAGGGCCTGTGAAAGCTGTCTGAAGAGATACCGGCCATGCTGGCTGCGTGTCAGAGGGTGACAGGGCGGAGGCTTCTGGGGGAAGTGACATCGCTGTGAGTGGTGCGTGTGAGACTGGGCGGTGTGGTGCAGGTTGAACGGATGTGGCGTGTGGAGTATGAGGGTGGGATGGGGAGGGAGAGGTGGAGGGCAGCCCAAGACAGAGCGCTTGACCCAAGTGCTGCCAGACAGTGACCCGAGGAGGGAGGAGGAGGAGGAGTTTGGAGCGCTGTGTCCGTCAGGAAACAGATGCTCCCGGAAGGAAGGTTTTCTCTGGCTCAGAGGAGGACCACTAAAGATGGAGTCCTGCGAGGAAAGAGATGTGGACCAAACATCAACAACAACATTTAAAGCCATTCAGCTTACAGTCAACTACATTTTGAACTGGAAATGTATAGTACGAAAAGTGAAGTGAAATACAGATGTGACTGCCCCTTTTAGAGAAGCTTTGGTTTGCTTATCTGTATTTTCATATTCATTTTCTCCACAGGCATTAATAAAAGTTCCCTTTTAGATCAGACAATTCAATGCTGTCTTAGCAGCTGACACTTTGGGAACTCTGGCCAGGATTCCCATGAGCATCTGGCCATGCATGCTTACATTTCACTTTTACAGGAAACTGAGTGTAGAAAATTGGAGACCGTCCTTCAAAGTGTTGGTATTCATTTTCTTATAAAATGTAACTTTAAAGTGTTTAAAGACATTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU135414 True 1061 TUCP 0.45 2 5781074 5782246

Neighbor

gene id symbol gene type direction distance location
CI01000021_05729351_05729635 NA coding downstream 50979 5729284 ~ 5730095 (-)
CI01000021_05693567_05698301 NA coding downstream 82773 5693173 ~ 5698301 (-)
CI01000021_05651690_05674009 NA coding downstream 106693 5651616 ~ 5674381 (-)
CI01000021_05638487_05640144 NA coding downstream 140930 5637900 ~ 5640144 (-)
CI01000021_05588398_05594436 NA coding downstream 186638 5588344 ~ 5594436 (-)
CI01000021_05797550_05804777 CNBPA coding upstream 14462 5796708 ~ 5804777 (-)
CI01000021_05830018_05845856 SYN2A coding upstream 47059 5829305 ~ 5846136 (-)
CI01000021_05876056_05879110 NA coding upstream 93322 5875568 ~ 5879110 (-)
CI01000021_05892651_05906514 SLC6A1B, SLC6A1A, SLC6A1 coding upstream 109607 5891853 ~ 5907521 (-)
CI01000021_05918146_05919901 NA coding upstream 135451 5917697 ~ 5921113 (-)
G119263 NA non-coding downstream 184831 5596009 ~ 5596243 (-)
G119262 NA non-coding downstream 185149 5595611 ~ 5595925 (-)
G119253 NA non-coding downstream 234847 5546021 ~ 5546227 (-)
G119212 NA non-coding downstream 258148 5522630 ~ 5522926 (-)
CI01000021_05519376_05522107 MTG2 non-coding downstream 262150 5517230 ~ 5522107 (-)
G119229 NA non-coding upstream 365 5782611 ~ 5785590 (-)
G119332 NA non-coding upstream 100959 5883205 ~ 5883413 (-)
G119359 NA non-coding upstream 218004 6000250 ~ 6000500 (-)
G119787 NA non-coding upstream 312912 6095158 ~ 6095456 (-)
G119791 NA non-coding upstream 315831 6098077 ~ 6098327 (-)
G119267 NA other downstream 167085 5613442 ~ 5613989 (-)
G119215 NA other downstream 250148 5524855 ~ 5530926 (-)
G118801 NA other downstream 626783 5153891 ~ 5154291 (-)
G118639 NA other downstream 1013702 4750097 ~ 4767372 (-)
CI01000021_04035411_04049515 CCM2L other downstream 1731482 4035189 ~ 4049592 (-)
G119967 NA other upstream 1020609 6802855 ~ 6807625 (-)

Expression


Co-expression Network