G119229


Basic Information

Item Value
gene id G119229
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 5782611 ~ 5785590 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU135410
AAACCTCAAATTACAAGCATTCTCTGTTCTACAACAACTAAATAGAACAATGGCGTTTATGAGCCATTTCTGAGAGGGGTTGATTTGGACAGTGTGATGATAGCAGCCTGTGAGAAGAGAGACATACAGACAGATGGGAACACGAGATACTGTACACACTATATACACTATGAGTTCCTAACGTGGTCCCCTAATATATTCATTATTACTGCTCAAATGTGTCTTTACAAGCCCTCTTTACATGGGCTAATGGTGGTTCACATGATCTGTATTGATCTCTGCAGTTACACACGACAGTACTGAAACATGAGATAATGCTGAGATGAAACATAAAAGGGCAGAATAAAAATATACAGTATCATAAGAAAGTGAAATAAAGAGTTCAGGCTGTGTTTTGCATTTGAACCTTCAGTGCACATTGCTGGGGTCTCGCCTGTCAATCAGATTATTATTAATAATTATTATTATTACAGTTATTAACATTTTATGCAGAAAAAAAAAATCTTTGGAAAGTGTTAGTTTGAAGTAATATTATAAATACAAGAGCTTTTAAATTTCCTGTTAAAGTCAACATGAAACGACGTTCACGAACCCATTTTACTTCCTTGAGTGAAACTGAATATTAAACCCTTTATTTTCTTTGAATGAATCGCACACAATAAGACCAGGAACGTCTTTAGAAAGTAAACCGGGTGAGTTTTGGTTTCATGTTGACTTTAGTACACCAGAATGAATATTGCACTCAATATATGTGATATGTTCAAAAGAAAACCTAATGCTTTGGTTTGGGGTCATGAAAACATGATTACAAAACTGTGATACTGAAAAAAATGTGAAAAATTGTTCTTCAGTTTTCAGCTTATATATCTGATCAGAATGCTTCATTTCACAGACCAGACGTTCATTTCTAAAGATATACATTCCTCTAAACATACAGACGCTTGCATAATATAGCAGAATATTCACCTGAAACAATCTCCTGGTTAAAGTAAAAAAAAAAAAAGAGTACTTTTTACATGATTGCACTTCATTGCCATGGTAACACTGGTTTATTTTCTATAATAAATAAACACCCAAGAACAACATCGATAACAAATCACAGTTAAAGCCTAGCCGATCACTTTGACGTCGCATTCGATGGAAAAACACTCGTTTGATGAGAATCTACACGCCACTATGCTGAAGTAATGCTTTAGTCATCTTGACCAACATATTGCACTTATGAAGAAACAAGAGCAATCTTTAATATATAGAAAAATAATCCAGTCACTGGCCCTCAGAAGTCCTGTGCATAACTCCAAAGGAAAAGAAAAATATGGGGGAAAAAACCCAAAAAAAGTTCTTTTAAAAAATCTAGCTCCAGACATGCAAACATATTTTATCATCTCCTCAAAACCCTTACTGTGAGATCATGTGACGCTGTACTAGCAGCTCGAAGCGCCACATTATACTGCGTTTGTGCTTCAAAATCAGCTTATATTGGGTCACAATGGAAGGTTTCTAGTAGCATACTCCTTTACATATGACTTTGACTCAAACTGACCAAGATATTGTTCTTAAAAAGTTCTGAATACATTTTTTAACATCGCTTTTTGCTTACAATGGTTTGAGTTGCACTACTGTACTACTATACTACACACAAACACACAGCTGATGGGTGCAATGGTCATTGGCACGTTGATTTATGATTGTTAGACAACATATAGAGCTGTCATCTACAACAAATACAGCGTTAGAACATCTACTCTGTCATTCTGCTAGTCTGAATGAATATCAGTCTCAAAAACACAATGTTTGAATACAGGCAAACCTACTATTTCATTGTTTGTGTTTATATCTTCTGTGGGGTGAATCTAACAAAACCCATCGAAATCAGCAAAAAACCTTGCAAGAAAATATTTTGCATAAAGGCAACAAAGCCTAATTTTAGGACCATTAAGATTATTTGTAGATTGATATTCTAAGCACAATTTTGCATACTCATAAAAAAAAGAAACATTTTGTGAATCCTATTAGAATTATATTACTGCAATATGGAAAAAATGTATTATTTGAATTGAAAAATATTTATACAGCATGATAATATTTGTTCTACTGACTATAAATAAGTTTAATACTTATTCTGCTAACCTAAACCTACCAGCCTACTAATACTCTAATGAGAGTTAGTTGACATGTAGTTGCAAAGTTACTTATAGTCAGTAGAACGTCTAAAGTGGACCACTGAAATGAAGTGTTACCAAAAATAAATAAATAATAATAATAATAACAACTTTAAAATGTAGTACAGTAATAAATAAATGCAAAGTGTCATGAAAATATCACAATCAGTGTTGGGTTTAATGCATACTGTAAATTAATTACTCTTCCCTTGAAAATGTAAAGTAAGGGATTACTCTTGATTTTTCTGTAATTTAATTACAGTTACTTCTGATGTAATTGCACTATACTCTATAGAACAATTCTATATAAAACAATAGTGTATTTAACATCAAAATTTAACATTTAATGGTAACATTCATAGTTTTAATGTAACCTTCTCCCTTTAAATACTTCAGTTTAAGAATAATTTATGCAATTTCATATTATTTATTTGAAAGAACTGAAAGAGCAGTTTCATGTCTATCCTTGTGTTGATATGGGATTTGTTTAAGATGTAATTAGTAGCTAGTAATTGATTACTTTTTTTTAGAGTATCTTACCTAACAATGGTCACAGTGCAATAGATCTTAACGGTCCTTGATTTTCTTTATGCAAAATATAATTTCTTAATTATAATCTTGTGTCATTCACCTATAGGCAGAATGCTAAAAGTATGAAAGACAGATGCTGTTTCTGCACATGTGTTGCTCCTTCCGCACTGCTCGGGTTTGGCTGGTATGGCTGAGTTTTGCTCATCGAGTGTCCGTTTAAAGTTAAAGGATTAGTTCACTTTCAAATTAAAATTTCCTGATAATTTACTCACCCCCATCCAAGATGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU135410 True 2980 lncRNA 0.33 1 5782611 5785590

Neighbor

gene id symbol gene type direction distance location
CI01000021_05729351_05729635 NA coding downstream 52516 5729284 ~ 5730095 (-)
CI01000021_05693567_05698301 NA coding downstream 84310 5693173 ~ 5698301 (-)
CI01000021_05651690_05674009 NA coding downstream 108230 5651616 ~ 5674381 (-)
CI01000021_05638487_05640144 NA coding downstream 142467 5637900 ~ 5640144 (-)
CI01000021_05588398_05594436 NA coding downstream 188175 5588344 ~ 5594436 (-)
CI01000021_05797550_05804777 CNBPA coding upstream 11118 5796708 ~ 5804777 (-)
CI01000021_05830018_05845856 SYN2A coding upstream 43715 5829305 ~ 5846136 (-)
CI01000021_05876056_05879110 NA coding upstream 89978 5875568 ~ 5879110 (-)
CI01000021_05892651_05906514 SLC6A1B, SLC6A1A, SLC6A1 coding upstream 106263 5891853 ~ 5907521 (-)
CI01000021_05918146_05919901 NA coding upstream 132107 5917697 ~ 5921113 (-)
G119263 NA non-coding downstream 186368 5596009 ~ 5596243 (-)
G119262 NA non-coding downstream 186686 5595611 ~ 5595925 (-)
G119253 NA non-coding downstream 236384 5546021 ~ 5546227 (-)
G119212 NA non-coding downstream 259685 5522630 ~ 5522926 (-)
CI01000021_05519376_05522107 MTG2 non-coding downstream 263687 5517230 ~ 5522107 (-)
G119332 NA non-coding upstream 97615 5883205 ~ 5883413 (-)
G119359 NA non-coding upstream 214660 6000250 ~ 6000500 (-)
G119787 NA non-coding upstream 309568 6095158 ~ 6095456 (-)
G119791 NA non-coding upstream 312487 6098077 ~ 6098327 (-)
G119792 NA non-coding upstream 313929 6099519 ~ 6099884 (-)
G119233 NA other downstream 365 5781074 ~ 5782246 (-)
G119267 NA other downstream 168622 5613442 ~ 5613989 (-)
G119215 NA other downstream 251685 5524855 ~ 5530926 (-)
G118801 NA other downstream 628320 5153891 ~ 5154291 (-)
G118639 NA other downstream 1015239 4750097 ~ 4767372 (-)
G119967 NA other upstream 1017265 6802855 ~ 6807625 (-)

Expression


Co-expression Network