XLOC_000828 (si:ch211-114l13.12)


Basic Information

Item Value
gene id XLOC_000828
gene name si:ch211-114l13.12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 57981823 ~ 57991025 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001321
atgATCCACATCTCTGAAGATAAACTGCTCATATTCACTCTGCTGATCCTCATGACAGTGGTGTATTCTGAGATGAAGACCTTCACTGGACATGAAGGAGGGAAAGTGGAGATAAGGTGTCCATATAATGCTAAATATGAGGAGATGGAGAAATATCTCTGCAGAGGAGAATGCCCAATATATGATAAAGACATTCCTGTTGAATCTGGATCAGAACCTGTAGATAAGAGATTCTCTCTGACTGATAACAGGACAGCTCACATCTTCACCATCACCATCACTGATCTCAGAACAGACGATCAAGGAAAATACTGGTGTGCTGTGAAGACAGGAATTGGAAGTTTTGATAAGTATACAGAGATTTACCTGGAAATAAAACAGGTGTCTCGAGTTTCTGGAGAACCTGGAAAACATCTGAGCATCACCTGCAGTTATACAAGAGATCTGAAAGAACTCATCAGATTCCTCTGCAAAGGAAGCGACCCATCCGACTGTAAGAACATCATCAAAGTTtcatcaaaaacaaaaactaatggcCGATTCTCTCTGACTGATGATTCTGAGACAGTTTTCACTGTAAACATCAGAGATCTGACAGAGGAGGATTCTGGGATATACTGGTGTGGAGCTGCAGAGAAACAAGCACAAGAGTACACATGGATTTCAGCCATAGATCTGCACATTACTGAACCCACATCAGCGCCAAGACTTCCTAAAAATACCTCAACTGCTTCATTTCACACCAGCAAACCAGCAGATCCTGCATCCAGCAGACCCGTCACACCTTCATCATCTGCATCATCATCGTCAatatcaatgtttttaaatgcatccACCAATGCAGCATCATCACACACACCATTAgGGTTTACAGCATTCATCATGCTGATGGTCGTAGTGATGCTGACGGTGTTTGGACTCTCGTTGTTCCTGTACCTCAagagaaaacaaaagaaaaaagGAGCGCAGACCAAAGATGACATCTATTACCAACCTGAGAATCTGCCAAATGGAAACACGGAGACAACTAGAGAAGCCTCTCATGGTGTCAGTGATTATGAAGAGATCAGCTCTTCTCTTAATAACCCCATCTACTCTTCAGTCTCTCCTGCTTTCAGTAAACAGGACGTCTCTGTTTATGCTGTAGCACAGTTACCCAGCAGCCCCTCTGATCATCTCAACTACTCCACCGTCAGGTTTTCAGCTTCACATCTTTCGGACAGGACTTCCGGTGGATTAGACACATGCGATTATGCCACTGTTAATGTCTAA
>TCONS_00001322
TTTCACTGTAAACATCAGAGATCTGACAGAGGAGGATTCTGGGATATACTGGTGTGGAGCTGCAGAGAAACAAGCACAAGAGTACACATGGATTTCAGCCATAGATCTGCACATTACTGAACCCACATCAGCGCCAAGACTTCCTAAAAATACCTCAACTGCTTCATTTCACACCAGCAAACCAGCAGATCCTGCATCCAGCAGACCCGTCACACCTTCATCATCTGCATCATCATCGTCAatatcaatgtttttaaatgcatccACCAATGCAGCATCATCACACACACCATTAggtaatatttatttagttttttccctCAGAAATAGGTCATATTATGCTGATTTCATTGTCTGCTTCTTAAGGGTTTACAGCATTCATCATGCTGATGGTCGTAGTGATGCTGACGGTGTTTGGACTCTCGTTGTTCCTGTACCTCAagagaaaacaaaagaaaaaaggtaACTTTCTTActtaaaccttttattttctcATTTACCATAGTAAAGCTGGACTTTAGTGTCAAAACACAGGTCTGATTAG

Function

symbol description
si:ch211-114l13.12 Predicted to enable transmembrane signaling receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to several human genes including CD300H (CD300H molecule (gene/pseudogene)); CD300A (CD300a molecule); and CD300C (CD300c molecule).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120215-211 Predicted to enable transmembrane signaling receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to several human genes including CD300H (CD300H molecule (gene/pseudogene)); CD300A (CD300a molecule); and CD300C (CD300c molecule).

Ensembl:

ensembl_id ENSDARG00000088019

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001321 False 1272 mRNA 0.43 7 57981823 57991025
TCONS_00001322 True 544 lncRNA 0.40 2 57983974 57984888

Neighbor

gene id symbol gene type direction distance location
XLOC_000827 si:dkey-156m2.3 coding upstream 1762 57966831 ~ 57980061 (+)
XLOC_000826 NA coding upstream 50231 57926893 ~ 57931592 (+)
XLOC_000825 si:dkey-1c7.2 coding upstream 188094 57787642 ~ 57793729 (+)
XLOC_000824 si:dkey-1c7.2 coding upstream 201975 57774454 ~ 57779848 (+)
XLOC_000823 LO018597.2 coding upstream 231456 57744400 ~ 57750367 (+)
XLOC_000829 BX469930.2 coding downstream 12590 58003615 ~ 58017364 (+)
XLOC_000830 trim35-1 coding downstream 48526 58039551 ~ 58049515 (+)
XLOC_000831 si:ch211-114l13.4 coding downstream 75084 58066109 ~ 58076716 (+)
XLOC_000832 si:ch211-114l13.13 coding downstream 88028 58079053 ~ 58088949 (+)
XLOC_000833 si:ch211-114l13.1 coding downstream 100634 58091659 ~ 58102982 (+)
XLOC_000822 NA non-coding upstream 239387 57742079 ~ 57742436 (+)
XLOC_000819 NA non-coding upstream 269587 57710298 ~ 57712236 (+)
XLOC_000818 NA non-coding upstream 416587 57541116 ~ 57565236 (+)
XLOC_000816 NA non-coding upstream 548407 57419348 ~ 57433416 (+)
XLOC_000837 BX927298.1 non-coding downstream 169126 58160151 ~ 58173589 (+)
XLOC_000864 NA non-coding downstream 586894 58577919 ~ 58585132 (+)
XLOC_000865 NA non-coding downstream 595328 58586353 ~ 58595767 (+)
XLOC_000871 NA non-coding downstream 655660 58646685 ~ 58669075 (+)

Expression


Co-expression Network