XLOC_008289


Basic Information

Item Value
gene id XLOC_008289
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5468098 ~ 5471508 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018884
ATGAATTCTAAAATCATGTATTATAAACAGGACACACTTTTAGTGCACAAATCGCTTACTATAATTTACCCAGAAAGACTGTATGTAGTGTCAAAAAGTATCAATAGTTAGTATCAAAAAGTAGCATGTATAAGGCATTTTCTTTAACAGTAGCATAAAACAAAGACAGGTAAAAAACaatatgaactaaaaaaaaaaaaacatttacaaaaataactgTTGCAAACAAACATTCAGCAGTTCCCTTGATACTTGTGCTAGTTTGAAAACCATCCACATTTAGAAAGGTCAGGTTTACTGCAGTaacatcattaaaaaatattcttttttacatttatttagatcAGTTGCTCCAAGTATAATGCCAAAAGCATCTGTTTTAGTTATTCTAAGTGAACCAAAATGTCTAATAGAAGTTTATTCTTGTCAACAGATCACTTCTGTCTGGTTTAATCAGTTTTGAAAATCAGTTTTATTCACTAATTCCATTTCAAGTTGGCAATAAAATAtaa
>TCONS_00018885
TTGAAAACAATCCACATTTAGAAAGGTCACGTTTACTGCAGTaacatcattaaaaaatattcttttttacatttatttagatcAGTTGCTCCAAGTATAATGCCAAAAGCATCTGTTTTAGTTATTCTAAGTGAACCAAAATGTCTAATAGAAGTTTATTCTTGTCAACAGATCACTTCTGTCTGGTTTAATCAGTTTTGAAAATCAGTTTTATTCACTAATTCCATTTCAAGTTGGCAATAAAATAtaagtattaatatttatatatttactttgtAAGTTACAAGACGTGATAATAGAATAGAATGTctttaattaatatgttaaccttcaaaataaaaattttatttctaaataaatttacccaaaacaaatgaattaaaaatggaatgaaaatgttttatgtttttatggaTGTATTTGTATTATGTCTTTTGACAAATCGTGGCATGAAGTTTGCTCACTTTTttccttaattcattcgttttacccagtggatgcctttccacctgcaaccctgtactgggaaacacccattctgacatttcttcagattttttaaaaagaatttagAAAGGGTGAATGCAAATGCTGTGACACCATTGTAAAATATGATGGGATGCaaagcttatttttatttaaatttttttttagaatttactcattagtagaaaaaaaaaggtttggtgCAAAAATTGTtcagaaaaataagttaaattaattatacacagttaaagtcagaattattagcacttttttttcccaatttctgtttaacggagagatttattcaacaaatttctaaacataatagactTTCTCCTTAtaaacat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018884 False 512 lncRNA 0.29 2 5468098 5470851
TCONS_00018885 True 833 lncRNA 0.27 3 5468360 5471508

Neighbor

gene id symbol gene type direction distance location
XLOC_008288 or112-1 coding upstream 103590 5360407 ~ 5364508 (+)
XLOC_008287 CABZ01018874.1 coding upstream 123594 5343186 ~ 5344504 (+)
XLOC_008286 si:ch1073-22e3.1 coding upstream 126719 5339056 ~ 5341379 (+)
XLOC_008285 or113-2 coding upstream 133842 5332900 ~ 5334256 (+)
XLOC_008284 or113-1 coding upstream 144552 5321612 ~ 5323546 (+)
XLOC_008290 mrap coding downstream 156855 5628363 ~ 5630452 (+)
XLOC_008291 NA coding downstream 370049 5841557 ~ 5853342 (+)
XLOC_008292 BX088654.1 coding downstream 383603 5855111 ~ 5855225 (+)
XLOC_008293 get1 coding downstream 430462 5901970 ~ 5916820 (+)
XLOC_008294 sh3bgr coding downstream 452343 5923851 ~ 5958803 (+)
XLOC_008463 BX663520.1 misc downstream 15780683 21252191 ~ 21252282 (+)
XLOC_008278 NA non-coding upstream 211316 5256501 ~ 5256782 (+)
XLOC_008271 NA non-coding upstream 913670 4553896 ~ 4554428 (+)
XLOC_008270 NA non-coding upstream 936133 4528549 ~ 4531965 (+)
XLOC_008269 NA non-coding upstream 1147083 4313091 ~ 4321015 (+)
XLOC_008268 NA non-coding upstream 1513407 3949880 ~ 3954691 (+)
XLOC_008297 NA non-coding downstream 687501 6159009 ~ 6160503 (+)
XLOC_008299 CU655863.1 non-coding downstream 1087542 6559050 ~ 6559185 (+)
XLOC_008301 CU633984.1 non-coding downstream 1207013 6678521 ~ 6727082 (+)

Expression


Co-expression Network