XLOC_008291


Basic Information

Item Value
gene id XLOC_008291
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5841557 ~ 5853342 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018886
ATCCCGGAAAGGCTCCGAATCCTCACACTCAAACATGTAGTCCAGTAAACGTTTACAATGGTCCTTCCAAGCATCCCTGTCCAGCACAACCTCCACTGATGGCTGCCAAAATCAAGAGAAGGGGATGACGTCTCCTCTTCACCTACAGCCGGCTCCTCATCTGCTGGctcttcttcctcctcatcatcctcctcatcctcctcttcAGAGCTGCTGATCCTGCGGGTAGTGCGTCGTCTAGAAGAATCTGACGTTCGCACACTTATTCCTGCATCTGCCGTCCAGTCGGAATAATCACTGGAGGAGCGGCTTCAGTTATGAACAGAGAGGCATTGGAAACCATTAGATTAATAGAGATGGCACTATCGATTGAAAGCATTGTATGAAAGACTCTTTTTCATTAGCAGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018886 True 409 lncRNA 0.49 2 5841557 5853342

Neighbor

gene id symbol gene type direction distance location
XLOC_008290 mrap coding upstream 211105 5628363 ~ 5630452 (+)
XLOC_008289 NA coding upstream 370049 5468098 ~ 5471508 (+)
XLOC_008288 or112-1 coding upstream 477049 5360407 ~ 5364508 (+)
XLOC_008287 CABZ01018874.1 coding upstream 497053 5343186 ~ 5344504 (+)
XLOC_008286 si:ch1073-22e3.1 coding upstream 500178 5339056 ~ 5341379 (+)
XLOC_008292 BX088654.1 coding downstream 1769 5855111 ~ 5855225 (+)
XLOC_008293 get1 coding downstream 48628 5901970 ~ 5916820 (+)
XLOC_008294 sh3bgr coding downstream 70509 5923851 ~ 5958803 (+)
XLOC_008295 igsf5b coding downstream 120567 5973909 ~ 6017920 (+)
XLOC_008296 PCP4 coding downstream 256519 6109861 ~ 6118668 (+)
XLOC_008463 BX663520.1 misc downstream 15398849 21252191 ~ 21252282 (+)
XLOC_008278 NA non-coding upstream 584775 5256501 ~ 5256782 (+)
XLOC_008271 NA non-coding upstream 1287129 4553896 ~ 4554428 (+)
XLOC_008270 NA non-coding upstream 1309592 4528549 ~ 4531965 (+)
XLOC_008269 NA non-coding upstream 1520542 4313091 ~ 4321015 (+)
XLOC_008297 NA non-coding downstream 305667 6159009 ~ 6160503 (+)
XLOC_008299 CU655863.1 non-coding downstream 705708 6559050 ~ 6559185 (+)
XLOC_008301 CU633984.1 non-coding downstream 825179 6678521 ~ 6727082 (+)
XLOC_008302 CU694757.1 non-coding downstream 917244 6770586 ~ 6772120 (+)

Expression


Co-expression Network