XLOC_008296 (PCP4)


Basic Information

Item Value
gene id XLOC_008296
gene name PCP4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 6109861 ~ 6118668 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016672
ATGAGCCAAAGGCAAGGATCCGGAGCAGCTGGTGGCAACAGCAAAACCTCTGGTGCACAAGATGCGTCTAAGAAAGACGTGCCAGAGGACTTTGACATCGACATGGACGCCCCTGAAACCGAGAAGGCAGCCGTCGCCATTCAATCGCAGTTCAGGAAGTTCCAGAAGAAGAAGAACGATGACAAGTCGTAG
>TCONS_00016673
GGTGTATCAAAAAATGCGTCTAAGAAAGACGTGCCAGAGGACTTTGACATCGACATGGACGCCCCTGAAACCGAGAAGGCAGCCGTCGCCATTCAATCGCAGTTCAGGAAGTTCCAGAAGAAGAAGAACGATGACAAGTCGTAG
>TCONS_00016674
atgccccagtatagtgagaGGGACTCTAGTGggtATGCGTCTAAGAAAGACGTGCCAGAGGACTTTGACATCGACATGGACGCCCCTGAAACCGAGAAGGCAGCCGTCGCCATTCAATCGCAGTTCAGGAAGTTCCAGAAGAAGAAGAACGATGACAAGTCGTAG

Function

symbol description
pcp4 Enables calcium ion binding activity and calmodulin binding activity. Involved in calmodulin dependent kinase signaling pathway and positive regulation of neuron differentiation. Located in cytosol and nucleus. Part of protein-containing complex. Biomarker of Huntington's disease and leiomyoma.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000110729

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016672 False 192 mRNA 0.53 3 6109861 6118668
TCONS_00016673 False 144 mRNA 0.49 2 6114109 6118668
TCONS_00016674 True 165 mRNA 0.52 2 6117502 6118668

Neighbor

gene id symbol gene type direction distance location
XLOC_008295 igsf5b coding upstream 91941 5973909 ~ 6017920 (+)
XLOC_008294 sh3bgr coding upstream 151058 5923851 ~ 5958803 (+)
XLOC_008293 get1 coding upstream 193041 5901970 ~ 5916820 (+)
XLOC_008292 BX088654.1 coding upstream 254636 5855111 ~ 5855225 (+)
XLOC_008291 NA coding upstream 256519 5841557 ~ 5853342 (+)
XLOC_008297 NA coding downstream 40341 6159009 ~ 6160503 (+)
XLOC_008298 bace2 coding downstream 341179 6459847 ~ 6493615 (+)
XLOC_008299 CU655863.1 coding downstream 440382 6559050 ~ 6559185 (+)
XLOC_008300 nop53 coding downstream 533728 6652396 ~ 6666303 (+)
XLOC_008301 CU633984.1 coding downstream 559853 6678521 ~ 6727082 (+)
XLOC_008463 BX663520.1 misc downstream 15133523 21252191 ~ 21252282 (+)
XLOC_008289 NA non-coding upstream 638353 5468098 ~ 5471508 (+)
XLOC_008278 NA non-coding upstream 853079 5256501 ~ 5256782 (+)
XLOC_008271 NA non-coding upstream 1555433 4553896 ~ 4554428 (+)
XLOC_008302 CU694757.1 non-coding downstream 651918 6770586 ~ 6772120 (+)
XLOC_008304 NA non-coding downstream 666981 6785649 ~ 6786055 (+)

Expression


Co-expression Network