XLOC_008297



Basic Information


Item Value
gene id XLOC_008297
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 6159009 ~ 6160503 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00018887
CCATATTCAGAGTAGCGAACAGCACCCTCTTCTCCGCTGTTCCTGCACTGTTGCCGACTCTCATCTGGAGCTCATACCAGGTGGCCTCCTGTAGGTCGTACAGAATGTGGCTCTTGGTGAGGGAATCCCGCTTTACCATAGTCCACTTGGTAGTGTCTACCGGCCGATATTCTAGTGTGAAGGAGTCAATTGGACAGCCACCGTTGTTCCAACCAATGAGGTTGAGCTCCACGCGGGTAGAGTTGATACTTGAGAAAAGCTCGTGGTCTTTGGCGAACTGTGgTTCTATT

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00018887 True 290 lncRNA 0.51 2 6159009 6160503

Neighbor


gene id symbol gene type direction distance location
XLOC_008296 PCP4 coding upstream 40341 6109861 ~ 6118668 (+)
XLOC_008295 igsf5b coding upstream 141089 5973909 ~ 6017920 (+)
XLOC_008294 sh3bgr coding upstream 200206 5923851 ~ 5958803 (+)
XLOC_008293 get1 coding upstream 242189 5901970 ~ 5916820 (+)
XLOC_008292 BX088654.1 coding upstream 303784 5855111 ~ 5855225 (+)
XLOC_008298 bace2 coding downstream 299344 6459847 ~ 6493615 (+)
XLOC_008299 CU655863.1 coding downstream 398547 6559050 ~ 6559185 (+)
XLOC_008300 nop53 coding downstream 491893 6652396 ~ 6666303 (+)
XLOC_008301 CU633984.1 coding downstream 518018 6678521 ~ 6727082 (+)
XLOC_008302 CU694757.1 coding downstream 610083 6770586 ~ 6772120 (+)
XLOC_008463 BX663520.1 misc downstream 15091688 21252191 ~ 21252282 (+)
XLOC_008291 NA non-coding upstream 305667 5841557 ~ 5853342 (+)
XLOC_008289 NA non-coding upstream 687501 5468098 ~ 5471508 (+)
XLOC_008278 NA non-coding upstream 902227 5256501 ~ 5256782 (+)
XLOC_008271 NA non-coding upstream 1604581 4553896 ~ 4554428 (+)
XLOC_008304 NA non-coding downstream 625146 6785649 ~ 6786055 (+)
XLOC_008306 NA non-coding downstream 706773 6867276 ~ 6875548 (+)

Expression



Co-expression Network