XLOC_008300 (nop53)


Basic Information

Item Value
gene id XLOC_008300
gene name nop53
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 6652396 ~ 6666303 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016678
ATCCACATACATGACGTCATCCCGCACATTTTCCCAACTCCTCCTCTTACACGCCATCATGGCGGCCGCCAGGAAGCACAAACGCATGGCAGCGTCTCAACCAGGGTTTTTACCTCTTAAATCCGATTTGGATGGTAGTATTTCGAATGCCAAACGGCGAAAGAGAgtgaacaaaaacaagaaaaagaactGGAACAAATACAGTGATATCCGAGATGTGGAAGACTTTCTGGACGACGTGCGGCTTCAGGAGAAAGCTACAGGgGGGTTGATATCTGAAAAACCAGATGACAGTCTCTTCTTCGTCGACACTGGTGAAAAAGAGAAAGATAAACAACCACAGACGACAGCCAAGAAAGGTAAACGATCTAAACCTTTGCGGATAGATCTAATTCTTCAACCGGATTCCCACATACCTCCTCCCAAAAATGTACTTGCATACCAACAGCCCAACGCTAAAAAGCAGCGGCGCATGGCAGAAAAAGCAGCTAAGCTGGCCGCTATGGGTGTGTTGCCGCGAAGAGAAAAGCTTCTTCAACTCCGAAGGGCAGCAGCTGCCTCTGGGGTGTCAGTTAAAGAAAAACCTGTGGCCAATAATAATCCAGAAAGGCCATTTTATGACCTGTGGAGTGAAGGCACACCTGAGACAGCTGATCCATTCTACCTTGAACAGACTAAGAAAAAGCTTATCAAGAGACCAGATAGACTAAATGAGAAACCTTCAGTGCTTCCTGCTATTGAAGTCATTGCTGCTGGAGGCTCATACAACCCAGACTTCTTTTCTCACCAGGAACTGCTTCGTGAAGCACATGAGGTGGAGGTCAAAAAGCTGAAAGTGGAAGAAAAGTTGGCACGACAGCTTGCTGTGAATCAGGACATTGCCACTGAGGAGAGCACCTTTAAAGAGCAGGTAGAGGGGTTAATTGAAGAAGATGAGGATCAACCAGAAGATGCAGATGGGGATGCTGACGACACTGTCATTGGGCCAACTGCAATACAGGAAAAGAAAACGGAGAGGCAAAGGAAAAAAGAGAAGGCTGAAAAGGTCAAGGAGTTGCAGAGGAAGGCAGAGCGTGAGGTGATCGATAAGAAACAGCAGTTGTTCCAATTGCGCTCTATTCGTGCAAACCTGAAGAATCAGGAACAGAGGACCAAGATGAGGCAGGCTCAGCGCAAGGCAAAACAAGAGGCAGAGAAAAGCATGCCTCGTCGACTGGGCAGACTCAAGTACCAGGAACCCGATCTCGATATTCAGCTCAGTGATGAGCTTGCCAGTTCACTTCGCAGTCTAAAGCCAGAGGGCAGCATCCTAAAAGACAGATTCAAGAGCTTACAGAAGAGAAACCTCATTGAACCCAGAGAAAGAGCCAAgTTTAAGAGGAGGTATAAGCTGAAGTACTCGGAAAAGAGAGCCTTCAGGGAGATACAGTGAACACCTGCTGTTATTTTTCCATCTTAGTACTCTGACAAATGATGTTGTGCGTTCATATTACTATAAAATATAAAGCTGTTCTATTCCAACAATCTCTTgcctttgtgttgtttttgaaaatGTCACTTCTTTTGTTTCTGTTTCATTAGTTCCCTCAGCCAGC
>TCONS_00016679
GAGAGCACCTTTAAAGAGCAGGTAGAGGGGTTAATTGAAGAAGATGAGGATCAACCAGAAGATGCAGATGGGGATGCTGACGACACTGTCATTGGGCCAACTGCAATACAGGAAAAGAAAACGGAGAGGCAAAGGAAAAAAGAGAAGGCTGAAAAGGTCAAGGAGTTGCAGAGGAAGGCAGAGCGTGAGGTGATCGATAAGAAACAGCAGTTGTTCCAATTGCGCTCTATTCGTGCAAACCTGAAGAATCAGGAACAGAGGACCAAGATGAGGCAGGCTCAGCGCAAGGCAAAACAAGAGGCAGAGAAAAGCATGCCTCGTCGACTGGGCAGACTCAAGTACCAGGAACCCGATCTCGATATTCAGCTCAGTGATGAGCTTGCCAGTTCACTTCGCAGTCTAAAGCCAGAGGGCAGCATCCTAAAAGACAGATTCAAGAGCTTACAGAAGAGAAACCTCATTGAACCCAGAGAAAGAGCCAAgTTTAAGAGGAGGTATAAGCTGAAGTACTCGGAAAAGAGAGCCTTCAGGGAGATACAGTGAACACCTGCTGTTATTTTTCCATCTTAGTACTCTGACAAATGATGTTGTGCGTTCATATTACTATAAAATATAAAGCTGTTCTATTCCAACAA

Function

symbol description
nop53 Predicted to enable 5S rRNA binding activity. Predicted to be involved in rRNA processing and ribosomal large subunit assembly. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleoplasm. Predicted to be active in nucleolus. Orthologous to human NOP53 (NOP53 ribosome biogenesis factor).

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0006364 rRNA processing biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005730 nucleolus cellular_component
GO:0008097 5S rRNA binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-051120-21 Predicted to enable 5S rRNA binding activity. Predicted to be involved in rRNA processing and ribosomal large subunit assembly. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleoplasm. Predicted to be active in nucleolus. Orthologous to human NOP53 (NOP53 ribosome biogenesis factor).

Ensembl:

ensembl_id ENSDARG00000100452

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016678 False 1595 mRNA 0.46 12 6652396 6666303
TCONS_00016679 True 635 mRNA 0.45 5 6661343 6666232

Neighbor

gene id symbol gene type direction distance location
XLOC_008299 CU655863.1 coding upstream 93211 6559050 ~ 6559185 (+)
XLOC_008298 bace2 coding upstream 158781 6459847 ~ 6493615 (+)
XLOC_008297 NA coding upstream 491893 6159009 ~ 6160503 (+)
XLOC_008296 PCP4 coding upstream 533728 6109861 ~ 6118668 (+)
XLOC_008295 igsf5b coding upstream 634476 5973909 ~ 6017920 (+)
XLOC_008301 CU633984.1 coding downstream 12218 6678521 ~ 6727082 (+)
XLOC_008302 CU694757.1 coding downstream 104283 6770586 ~ 6772120 (+)
XLOC_008303 si:ch1073-228b5.2 coding downstream 107573 6773876 ~ 6784965 (+)
XLOC_008304 NA coding downstream 119346 6785649 ~ 6786055 (+)
XLOC_008305 sirt2 coding downstream 120454 6786757 ~ 6807963 (+)
XLOC_008463 BX663520.1 misc downstream 14585888 21252191 ~ 21252282 (+)
XLOC_008292 BX088654.1 non-coding upstream 797171 5855111 ~ 5855225 (+)
XLOC_008291 NA non-coding upstream 799054 5841557 ~ 5853342 (+)
XLOC_008289 NA non-coding upstream 1180888 5468098 ~ 5471508 (+)
XLOC_008306 NA non-coding downstream 200973 6867276 ~ 6875548 (+)
XLOC_008311 NA non-coding downstream 1068186 7734489 ~ 7737531 (+)

Expression


Co-expression Network