XLOC_008303 (si:ch1073-228b5.2)


Basic Information

Item Value
gene id XLOC_008303
gene name si:ch1073-228b5.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 6773876 ~ 6784965 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016682
GAGTTTACGAGCTCTTTGGTTTGTACCTTCGCAGCTGCCatagaaaacaaaaatggcagcCCCCTTGGTGCGGCATGCCATGAGGAGATGTTTAGCACACAACTGTGCTGTTACTGTAAGGAGGGGTTTGCGTTCTGGTGCAACACCATCTGTCTTCACCAGGCTCTTACTAAAACTTGATCACTATTTCTATGATGTGGAGAGCTTTTTATATTTGAAAGAGTGGTGGAAGACAAAAGTGGTCAAGTTCCAGAATAAgtattTTGGTTATGTGCAAAAGAGGTATGGTGCTCAAATAGGAGCTGCATATTACATCCTGGCTATCAAAGGGAGCTTCAGATTTGCTGGCCAGTCTCAATGGTTTCGTCCAGACTCAACAGGAATGTTCAGCTTTATGAGGTCCCCTCATGGACAAATTGAAGAAGTGGATCTGAGTGGCACCCTAATAAACCTTAATGGACTCGGCAACCTTATATCCCAGAATAAACTGAAAACTCTCTCCTTACGAGGATGTCCGGAAGTGGACGACTGGTTCCTTGCTCGTCTTCACGTCTTTAGAGACAGTCTGGTGGAATTAGACCTGTCTGACTGCACTCATGTGACTGTAGGAGGGCTCGCTGCATTACAGAACCTCAGAAAACTAAAACGGCTGGACATTTCTGGACTTCCTCGACTTCAGTGTCCAGGTCTGGTCCGGATACTGTTGGAGGAAATGCTACCTCACTGTCAGGTCATTGGAGTTGAAAGTGAGCAGGGCATGATCCAGCCAGAAAGACAAGAGCCAACAGACATTGATGATGCTTCCACACAGAGTGGGCTGAGACGTTCATAATGGAGGCTTATGTAGCATCAAACAACTGTTCTGCCATTTTAACAAAGGGTTGTTCTGAATGTTATGTGCATGATTGTTGCAAATTTTATTGTAGATATAGATTATATAATGTTTTGAGACAAACACAATAAAAGTTTGTGTTGTAATgtgaaa
>TCONS_00016683
CAAATAGTTTAGTTTAGCTTTTCTTTAAaatgcagttctttatttttgtttgaaaaatttCTTTTATCTAAACttaattttctcttctttttttttgtggtttgcaTTAGTTTTACATTTCTTTGCTCAATAATCTAGGTTTCACTTGcaaatctatattttttaaaaggttaaTAAGGTTCTGTATTCCATATcctttacaaattatatattttaatctgTCTCTTTCAAAAGCGGCATGCCATGAGGAGATGTTTAGCACACAACTGTGCTGTTACTGTAAGGAGGGGTTTGCGTTCTGGTGCAACACCATCTGTCTTCACCAGGCTCTTACTAAAACTTGATCACTATTTCTATGATGTGGAGAGCTTTTTATATTTGAAAGAGTGGTGGAAGACAAAAGTGGTCAAGTTCCAGAATAAgtattTTGGTTATGTGCAAAAGAGGTATGGTGCTCAAATAGGAGCTGCATATTACATCCTGGCTATCAAAGGGAGCTTCAGATTTGCTGGCCAGTCTCAATGGTTTCGTCCAGACTCAACAGGAATGTTCAGCTTTATGAGGTCCCCTCATGGACAAATTGAAGAAGTGGATCTGAGTGGCACCCTAATAAACCTTAATGGACTCGGCAACCTTATATCCCAGAATAAACTGAAAACTCTCTCCTTACGAGGATGTCCGGAAGTGGACGACTGGTTCCTTGCTCGTCTTCACGTCTTTAGAGACAGTCTGGTGGAATTAGACCTGTCTGACTGCACTCATGTGACTGTAGGAGGGCTCGCTGCATTACAGAACCTCAGAAAACTAAAACGGCTGGACATTTCTGGACTTCCTCGACTTCAGTGTCCAGGTCTGGTCCGGATACTGTTGGAGGAAATGCTACCTCACTGTCAGGTCATTGGAGTTGAAAGTGAGCAGGGCATGATCCAGCCAGAAAGACAAGAGCCAACAGACATTGATGATGCTTCCACACAGAGTGGGCTGAGACGTTCATAATGGAGGCTTATGTAGCATCAAACAACTGTTCTGCCATTTTAACAAAGGGTTGTTCTGAATGTTATGTGCATGATTGTTGCAAATTTTATTGTAGATATAGATTATATAATGTTTTGAGACAAACACAATAAAAGTTTGTGTTGTAATgtgaaattttatttgttttacttttatgagATTTTGGTGGCAGGGTCATTCCTACTATTCAGTGCCATTTGTGTGTCCTAGGTATTATAtgcagaatatttaaaaatgcaatttaaaaaaattcttaaagcATGTCTTAAAGGATTATCTTTATCCACCATAGGACAAAATGATAAAActtaaattaagttgaaaataTTTCCTCAGTTAattgtattgtactgtactgtatttcAATGCATGCAGCTGAATTGCCATGTCCCAGGTCATGTACTGTACAGTGCgtaagtattcatagcgcttcactttttccacatttttttatgttacagccttattgcaaaatggattcaatttatttcctcaaaattttacacacaatacacacaacgacaatgtaaaaaaagagtttttgaaattattgcaaatttatttaaaattaaaaacttagtGATAAAAAAATGAGGGGTAAGGGTAGAATTGGGACTGGGGCTTTGTGTCCACCCTGTTAATCAACATATATTACACGTTTTTCTGGTTACTTGCAtccaaaaaactaaactaaactaacaaaattaaGCCACTTAAAAACAGGATTTAATTGCATTGCAGTTTCTTTTAATAGTAACTGAAatagatttccgcagatttttagctcatcacTGAGTCTattttttacttgagtaaatgtg

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-335 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human DMAC2 (distal membrane arm assembly component 2).

Ensembl:

ensembl_id ENSDARG00000096597

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016682 False 985 mRNA 0.44 6 6773876 6784279
TCONS_00016683 True 1835 mRNA 0.36 5 6774994 6784965

Neighbor

gene id symbol gene type direction distance location
XLOC_008302 CU694757.1 coding upstream 1756 6770586 ~ 6772120 (+)
XLOC_008301 CU633984.1 coding upstream 46794 6678521 ~ 6727082 (+)
XLOC_008300 nop53 coding upstream 107573 6652396 ~ 6666303 (+)
XLOC_008299 CU655863.1 coding upstream 214691 6559050 ~ 6559185 (+)
XLOC_008298 bace2 coding upstream 280261 6459847 ~ 6493615 (+)
XLOC_008304 NA coding downstream 684 6785649 ~ 6786055 (+)
XLOC_008305 sirt2 coding downstream 1792 6786757 ~ 6807963 (+)
XLOC_008306 NA coding downstream 82311 6867276 ~ 6875548 (+)
XLOC_008307 foxl2a coding downstream 269789 7054754 ~ 7058214 (+)
XLOC_008308 pik3cb coding downstream 279854 7064819 ~ 7161877 (+)
XLOC_008463 BX663520.1 misc downstream 14467226 21252191 ~ 21252282 (+)
XLOC_008297 NA non-coding upstream 613373 6159009 ~ 6160503 (+)
XLOC_008292 BX088654.1 non-coding upstream 918651 5855111 ~ 5855225 (+)
XLOC_008311 NA non-coding downstream 949524 7734489 ~ 7737531 (+)
XLOC_008312 CR589941.1 non-coding downstream 1020814 7805779 ~ 7805920 (+)
XLOC_008317 CR293508.2 non-coding downstream 1897857 8682822 ~ 8682937 (+)

Expression


Co-expression Network