Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_008309 |
| gene name | her8.2 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 7176182 ~ 7178865 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| her8.2 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; regulation of neurogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in gill; heart; and liver. |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0009952 | anterior/posterior pattern specification | biological_process |
| GO:0050767 | regulation of neurogenesis | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060815-4 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; regulation of neurogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in gill; heart; and liver. |
| ensembl_id | ENSDARG00000069675 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00016689 | True | 1046 | mRNA | 0.39 | 4 | 7176182 | 7178865 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_008308 | pik3cb | coding | upstream | 14305 | 7064819 ~ 7161877 (+) |
| XLOC_008307 | foxl2a | coding | upstream | 117968 | 7054754 ~ 7058214 (+) |
| XLOC_008306 | NA | coding | upstream | 300634 | 6867276 ~ 6875548 (+) |
| XLOC_008305 | sirt2 | coding | upstream | 368219 | 6786757 ~ 6807963 (+) |
| XLOC_008304 | NA | coding | upstream | 390127 | 6785649 ~ 6786055 (+) |
| XLOC_008310 | her13 | coding | downstream | 8363 | 7187228 ~ 7190183 (+) |
| XLOC_008311 | NA | coding | downstream | 555624 | 7734489 ~ 7737531 (+) |
| XLOC_008312 | CR589941.1 | coding | downstream | 626914 | 7805779 ~ 7805920 (+) |
| XLOC_008313 | cadm2b | coding | downstream | 814041 | 7992906 ~ 8151485 (+) |
| XLOC_008314 | mipep | coding | downstream | 1013850 | 8192715 ~ 8235529 (+) |
| XLOC_008463 | BX663520.1 | misc | downstream | 14073326 | 21252191 ~ 21252282 (+) |
| XLOC_008302 | CU694757.1 | non-coding | upstream | 404062 | 6770586 ~ 6772120 (+) |
| XLOC_008301 | CU633984.1 | non-coding | upstream | 449100 | 6678521 ~ 6727082 (+) |
| XLOC_008299 | CU655863.1 | non-coding | upstream | 616997 | 6559050 ~ 6559185 (+) |
| XLOC_008317 | CR293508.2 | non-coding | downstream | 1503957 | 8682822 ~ 8682937 (+) |
| XLOC_008318 | CR293508.3 | non-coding | downstream | 1552887 | 8731752 ~ 8731866 (+) |
| XLOC_008319 | NA | non-coding | downstream | 1583609 | 8762474 ~ 8765029 (+) |
