XLOC_008310 (her13)


Basic Information

Item Value
gene id XLOC_008310
gene name her13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 7187228 ~ 7190183 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016690
AGTGTCGTCCCCTTTGTGTGCAGATCAAATACTCCTGTTTTTACTCAGCTTTAATTTGCGGAGCGATGGTCCACGCTGCTGAACTTAGAAACAATCTTGGTGTTGGGGAATATGCATGTTATGGATTTAAAGGTGACAGAAAGACTAGAAAACCTATCGTGGAGAAAAAGAGGCGAGCACGTATTAATGAAAGCCTGCAGGATCTCAGGACATTGCTCACAAATAACGATTCGCAGACAAAGATGGAAAATGCCGAGGTGCTTGAGCTAACAGTAAAACGAGTGGAGAGCATCCTACAGAGCCGTTCTCAGGAAACTGGGGCTGTGACTCAAGAGGCCAGTGAGAGATTTGCAGCAGGTTATATTCAGTGCATGCATGAGGTGCACACTTTTGTGTCCACGTGCCCAGGAATCGAAGCCAGGGTGGCTGCAGAACTACTCAACCACTTGCTGGAGAGCATGCCATTAAATGAGAATCACCTTCATGACATGATTAAGGATCTCATATCAGAGCCTTCCTCTTCTGGTGACTCTTGGCAATCTGGAGAAGCACAAAACCCTGGAAGACACTGCGTGTCCGGCATGTCTTCAGAATTACCACAATTTCTGTCCAACCCCTTCTGTCATGATCTCTGCTCTGACCTGGATGAGACAGAGACTGAAGAACGCTCAGCATCAGCTGAAGACACCCTGGACTTCTCCATGGTCACACACTCTAAGTTCATGTGGAGGCCATGGTAGAAACAGCAAATGTTTCCTAACAATTAACCATGTCCTGGACTGGAGTTTTCTGGTCTTATGATCAGATTACATGAAGGTATGGCTGGAGCTTAAGAATTTCACTATTAGGAAAACAAAATAGTGAAACAATATTACTGGACACAACCCAGGGCAAGTTTAGCATATCACAAGATGTTTAGCAAACATGAATTGTCCTTTAATAATGTGATGCCTTCAAGTATAAAAAGCTAATTTAGGTTTATTCCAGTAGTTACAGACTTAACAAAAAATGAGTGAAAATAATTGATCCTAGAGTCtgaagaaatgcatttttttagtAAGACAAAAGATTTGTTTTGTGCCTTTGTAAAACCTAGTTCAAAATAATTCACATGAGGAAACTGTTACATAGATAGTTCATGTCCATCTGTAGTCATTGTAAAAGTTTGTCTTAAATAGTTTGCTTAGGGAATTCaaatacatgtttaaataaatattatttagcaTCAAGTGCCTTGATAATGACTTGTAgatcagggcccggtttttcaaaaggtttaatccggatcaaattgatccggatttagtaatcctgtttttgctaTCTGTAATCACGTAATCCAgtttactttttgagccagtttttcaaagcaacatcggattggatcaatctgatccggataggaacttttcaggattaCTAattctggataaccagtgctcaatcacaatgtagatagATAGGCCTAggtaaagagcaacaaatataatagccagtgtggggtcaatatcactatattttttttt

Function

symbol description
her13 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; regulation of neurogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; neural rod; optic cup; spinal cord neural tube; and trigeminal placode. Orthologous to human HES6 (hes family bHLH transcription factor 6).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050228-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; regulation of neurogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; neural rod; optic cup; spinal cord neural tube; and trigeminal placode. Orthologous to human HES6 (hes family bHLH transcription factor 6).

Ensembl:

ensembl_id ENSDARG00000007097

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016690 True 1526 mRNA 0.40 4 7187228 7190183

Neighbor

gene id symbol gene type direction distance location
XLOC_008309 her8.2 coding upstream 8363 7176182 ~ 7178865 (+)
XLOC_008308 pik3cb coding upstream 25351 7064819 ~ 7161877 (+)
XLOC_008307 foxl2a coding upstream 129014 7054754 ~ 7058214 (+)
XLOC_008306 NA coding upstream 311680 6867276 ~ 6875548 (+)
XLOC_008305 sirt2 coding upstream 379265 6786757 ~ 6807963 (+)
XLOC_008311 NA coding downstream 544306 7734489 ~ 7737531 (+)
XLOC_008312 CR589941.1 coding downstream 615596 7805779 ~ 7805920 (+)
XLOC_008313 cadm2b coding downstream 802723 7992906 ~ 8151485 (+)
XLOC_008314 mipep coding downstream 1002532 8192715 ~ 8235529 (+)
XLOC_008315 egln2 coding downstream 1145417 8335600 ~ 8382997 (+)
XLOC_008463 BX663520.1 misc downstream 14062008 21252191 ~ 21252282 (+)
XLOC_008304 NA non-coding upstream 401173 6785649 ~ 6786055 (+)
XLOC_008302 CU694757.1 non-coding upstream 415108 6770586 ~ 6772120 (+)
XLOC_008301 CU633984.1 non-coding upstream 460146 6678521 ~ 6727082 (+)
XLOC_008299 CU655863.1 non-coding upstream 628043 6559050 ~ 6559185 (+)
XLOC_008317 CR293508.2 non-coding downstream 1492639 8682822 ~ 8682937 (+)
XLOC_008318 CR293508.3 non-coding downstream 1541569 8731752 ~ 8731866 (+)
XLOC_008319 NA non-coding downstream 1572291 8762474 ~ 8765029 (+)

Expression


Co-expression Network