XLOC_008313 (cadm2b)


Basic Information

Item Value
gene id XLOC_008313
gene name cadm2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 7992906 ~ 8151485 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016692
AGGCGGCGACAAAAAACAAAGTGAAAGGTAGTCAGGCTCAGTTCCCCATCACCCAGAATGTGACGGTGGTTGAGGGCAGCACGGCAAACATGACCTGCCGAGTGGATTATAATGATAACACCTCCCTCCAGTGGTCAAATCCAGCACAACAGACCCTCTTCTTTGGGGACAAGAAAGCATTGAGGGACAACCGGATTGAACTGGTCCGAGCCTCGTGGAAGGAGCTGACCATCAGCATCAGTGACGTGGCTTTGTCAGATGAAGGACAGTACACATGCTCGCTCTTCACCATGCCTGTCAAGACTTCCAAGGCTTTCCTGACTGTGTTAGGTGTTCCAGCAAAGCCAGAAATCACGGGTCTCTCGAGACCTGCCCAGGAGGGAGAGGACGTCACACTGACATGCACCACATCTGGCAGCAAACCGGCTGCTGACATCCGATGGTTCAGGAACGACAAGGAGGTGCAAGCAGGTCAGAAGGAGGTAAACGCCACGGGCAGGTCATTCACGGTCAGGAGCAGCGTTCACCTGAAGGTGGACAGAAAGGATGATGGAGCTGCGTACACCTGTGTGGTGGAGCACGTCACGCTGGGCTCTTTACCGCACCAGGTCACAGAAGTGCTGGAGGTTCACTATCCTCCTCAGGTAAAGATTGTGCACTCAGTAATTGTACCTCAGGAAGGACAGTACTTCAAACTGGAGTGTATGTCCAAAGGCAACCCACTGCCTGAGCCAGTAATGTGGACAAAAGATGGAGGTGAGCTTCCAGACATAGAGCGAATGATCGTAGAGGGCAGAGATCTGATCATCACCACACTGAACAAAACAGACAACGGCACATATCGCTGTGAGGCCAGCAATCACCTCGGCACAAACAGAGATGAGTTTGTGCTCTATGTCTATGATCCCAACGCTCTGACGCAGCACGGCCCCGACCACGCGCTCATCGGCGGAGTGGTGGCCGTGGTGGTCTTCATCACCCTGTGCTTCATCATCGTCTTGGGCCGATATCTGGCCAGGCACAAAGGGACATACTTAACCAATGAGGCCAAAGGAGCGGAGGACGCCCCTGACGCAGACACTGCCATCATCAATGCGGAGGGGAACCACGCACATGCAGAGGAAAAGAAAGAGTACTTCATTTAGCACCTCTGTTTTTTCTGTTCAGTATTGTCACGGCAACACTGCGATCCAGCAGAGGAGGCGTTCTAGCGCTCCGCTCCCTCACAGCACTAGTCTGGTCtggctttctctctcttt
>TCONS_00016693
GGTAGTCAGGCTCAGTTCCCCATCACCCAGAATGTGACGGTGGTTGAGGGCAGCACGGCAAACATGACCTGCCGAGTGGATTATAATGATAACACCTCCCTCCAGTGGTCAAATCCAGCACAACAGACCCTCTTCTTTGGGGACAAGAAAGCATTGAGGGACAACCGGATTGAACTGGTCCGAGCCTCGTGGAAGGAGCTGACCATCAGCATCAGTGACGTGGCTTTGTCAGATGAAGGACAGTACACATGCTCGCTCTTCACCATGCCTGTCAAGACTTCCAAGGCTTTCCTGACTGTGTTAGGTGTTCCAGCAAAGCCAGAAATCACGGGTCTCTCGAGACCTGCCCAGGAGGGAGAGGACGTCACACTGACATGCACCACATCTGGCAGCAAACCGGCTGCTGACATCCGATGGTTCAGGAACGACAAGGAGGTGCAAGCAGGTCAGAAGGAGGTAAACGCCACGGGCAGGTCATTCACGGTCAGGAGCAGCGTTCACCTGAAGGTGGACAGAAAGGATGATGGAGCTGCGTACACCTGTGTGGTGGAGCACGTCACGCTGGGCTCTTTACCGCACCAGGTCACAGAAGTGCTGGAGGTTCACTATCCTCCTCAGGTAAAGATTGTGCACTCAGTAATTGTACCTCAGGAAGGACAGTACTTCAAACTGGAGTGTATGTCCAAAGGCAACCCACTGCCTGAGCCAGTAATGTGGACAAAAGATGGAGGTGAGCTTCCAGACATAGAGCGAATGATCGTAGAGGGCAGAGATCTGATCATCACCACACTGAACAAAACAGACAACGGCACATATCGCTGTGAGGCCAGCAATCACCTCGGCACAAACAGAGATGAGTTTGTGCTCTATGTCTATGATCCCAACGCTCTGACGCAGCACGGCCCCGACCACGCGCTCATCGGCGGAGTGGTGGCCGTGGTGGTCTTCATCACCCTGTGCTTCATCATCGTCTTGGGCCGATATCTGGCCAGGCACAAAGGGACATACTTAACCAATGAGGCCAAAGGAGCGGAGGACGCCCCTGACGCAGACACTGCCATCATCAATGCGGAGGGGAACCACGCACATGCAGAGGAAAAGAAAGAGTACTTCATTTAG

Function

symbol description
cadm2b Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in eye; immature eye; and nervous system. Human ortholog(s) of this gene implicated in autism spectrum disorder; malignant astrocytoma; obesity; psoriasis; and type 2 diabetes mellitus. Orthologous to human CADM2 (cell adhesion molecule 2).

GO:

id name namespace
GO:0021782 glial cell development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080506-3 Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in eye; immature eye; and nervous system. Human ortholog(s) of this gene implicated in autism spectrum disorder; malignant astrocytoma; obesity; psoriasis; and type 2 diabetes mellitus. Orthologous to human CADM2 (cell adhesion molecule 2).

Ensembl:

ensembl_id ENSDARG00000062633

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016692 False 1259 mRNA 0.53 9 7992906 8151485
TCONS_00016693 True 1119 mRNA 0.54 8 8043751 8151371

Neighbor

gene id symbol gene type direction distance location
XLOC_008312 CR589941.1 coding upstream 186986 7805779 ~ 7805920 (+)
XLOC_008311 NA coding upstream 255375 7734489 ~ 7737531 (+)
XLOC_008310 her13 coding upstream 802723 7187228 ~ 7190183 (+)
XLOC_008309 her8.2 coding upstream 814041 7176182 ~ 7178865 (+)
XLOC_008308 pik3cb coding upstream 831029 7064819 ~ 7161877 (+)
XLOC_008314 mipep coding downstream 41230 8192715 ~ 8235529 (+)
XLOC_008315 egln2 coding downstream 184115 8335600 ~ 8382997 (+)
XLOC_008316 tmem160 coding downstream 243334 8394819 ~ 8400091 (+)
XLOC_008317 CR293508.2 coding downstream 531337 8682822 ~ 8682937 (+)
XLOC_008318 CR293508.3 coding downstream 580267 8731752 ~ 8731866 (+)
XLOC_008463 BX663520.1 misc downstream 13100706 21252191 ~ 21252282 (+)
XLOC_008306 NA non-coding upstream 1117358 6867276 ~ 6875548 (+)
XLOC_008304 NA non-coding upstream 1206851 6785649 ~ 6786055 (+)
XLOC_008302 CU694757.1 non-coding upstream 1220786 6770586 ~ 6772120 (+)
XLOC_008319 NA non-coding downstream 610989 8762474 ~ 8765029 (+)
XLOC_008321 CR925772.1 non-coding downstream 887565 9039050 ~ 9039164 (+)
XLOC_008325 CU467862.1 non-coding downstream 1053779 9205264 ~ 9211131 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000308_01594565_01626825 CADM2, CADM2B coding CI01000308 null 1594565 ~ 1626825 (+)