XLOC_008316 (tmem160)


Basic Information

Item Value
gene id XLOC_008316
gene name tmem160
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 8394819 ~ 8400091 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016698
CTGGCAGTGTCGAAGTTCAGAGGTCGGGAAAAGGTCGTGTTTTGGGTTTACAGCATAAGCAATGGCTTCTATCAGATGGTTAATGGGTAGCCGGTTGTCTCGGTTCGTTTGTCCGTTCGCTCAGCTCGTGCGGCAGCCGGTGTTGCGGTATGTGCGGCCTCCGGTGCGCGCGCTTCACCGGGGGAGCGTTCGCCGGGCGGCGGAGAAAAACCCGCTAAACAGTAGAGCACGAGCAGTGGAGCAGCAGTACATCACAGAACTAGATAAAGCTGATGCTCTGATGCTGCGAAAGTCACATGAAACAGGATTTTTGTCCTGGTTCCGGAATGGTCTGCTGGCGACAGGCATCGGCGTTATTGCCTTTGTGCAGAGTGATGTGGGCAGAGAGGCTGGATATGCGTTCTTCATCTTGGGCGGGATGTGTGTGTCATTCGGTGGAGCGTCATATGTGACCAGTCTTCTTTCTCTGAGAAGGATCATGCTTCTGTCTCTGCCAGCAGTGCTGCTCCACACGGCTGTGGTGTCCAGCGCTGCCCTCTTCTGGCTGTGCGCAGTATCGCTCTACATCGGCCGGCTGGAGGTGGAGATCATCCACGACGAGGATGATGAAGAGCACGGAGCAGACGAAAGCAGCGAGTGTGCCGAATGCAGGGCCCGACGCGACAGAGAAAAAGGCCAGGACAAGTGAGGATTCAAAGTCAGCTAGGCCATCTCCACCAATCCAGAACCAGACTTCTGTGTTCACAAACTGACTTAAAAGAGAGAAGGTGGAACTGGCTTCAGGTCGGTGTGGAGATGCAGATTCTTCCAATATAATTGTGCTTGATTTATTACTTTTGTTTGCGTCTGTGTTTCTTATATTTCTGAACACAAGCTTTACAAAGGGTCAGTGATACATTCACATCTTTTCCTTTGTAATATAtgtatgtttaatttgttttgtttccttGTTCTGGGATTCGAGTGCTGGATTTTCAAAAAAGCTGACACTTAATTAGACATCTTGGTTGTTAGAAGTCATGTTCACTATTTTATACTGTGACGTGACTCAAAAATGGTAGTTCTGATATTTAGTTACAGTAAGATCCGACTTTGATCATtagtttatgcattttatttagaaaattaaCAGTAAATATTTCGTATTACACCAATAGAAATGTTTATTCATAAATATGCTATTGTTCATTGTGATTTAATATTAAACGATTTAGAATGTG

Function

symbol description
tmem160 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM160 (transmembrane protein 160).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-851 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM160 (transmembrane protein 160).

Ensembl:

ensembl_id ENSDARG00000069649

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016698 True 1220 mRNA 0.46 4 8394819 8400091

Neighbor

gene id symbol gene type direction distance location
XLOC_008315 egln2 coding upstream 11822 8335600 ~ 8382997 (+)
XLOC_008314 mipep coding upstream 159290 8192715 ~ 8235529 (+)
XLOC_008313 cadm2b coding upstream 243334 7992906 ~ 8151485 (+)
XLOC_008312 CR589941.1 coding upstream 588899 7805779 ~ 7805920 (+)
XLOC_008311 NA coding upstream 657288 7734489 ~ 7737531 (+)
XLOC_008317 CR293508.2 coding downstream 282731 8682822 ~ 8682937 (+)
XLOC_008318 CR293508.3 coding downstream 331661 8731752 ~ 8731866 (+)
XLOC_008319 NA coding downstream 362383 8762474 ~ 8765029 (+)
XLOC_008320 ap2s1 coding downstream 367559 8767650 ~ 8799977 (+)
XLOC_008321 CR925772.1 coding downstream 638959 9039050 ~ 9039164 (+)
XLOC_008463 BX663520.1 misc downstream 12852100 21252191 ~ 21252282 (+)
XLOC_008306 NA non-coding upstream 1519271 6867276 ~ 6875548 (+)
XLOC_008304 NA non-coding upstream 1608764 6785649 ~ 6786055 (+)
XLOC_008302 CU694757.1 non-coding upstream 1622699 6770586 ~ 6772120 (+)
XLOC_008325 CU467862.1 non-coding downstream 805173 9205264 ~ 9211131 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000154_01213994_01216752 TMEM160 coding CI01000154 null 1213084 ~ 1216752 (-)
bowfin (Amia calva) AMCG00013458 NA coding CM030125.1 CM030125.1 31496119 ~ 31502050 (+)