XLOC_008319


Basic Information

Item Value
gene id XLOC_008319
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 8762474 ~ 8765029 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018889
AGCATGCCTCCCTCTCTCTGCTGTTTCACTCCTTTATCTGCAGCGGCGGCGGCTCACAAAATTTATCAAGACGAAGAAGAGGAAGAACAGTGTTAATAGTCCAGGAGTAGTCCCACAAACATCGGCGTTTCCCTTTCTGCAGCTGTCCGAAAGCGACACAATCTCTTCCTCTCAATGACTGGTCGTCTGCTCAAAGTTTTCAACAATCTGATTTGCGATTCTCTCCCAAATATGCGACAAATAGCatcgagagagagaaaaaatgaaTATCAGATCACTGTTTTCTTGTTGGAAAGGAGTGGGCGTTGAAGGAGAAAGATTGGGGGGGAAACGAGCTTTGTATCGCGGTGTCTTTCCCTTGGGTTCACCACGTTGTTTTTGAGCACTTATAATTTCCTTTGTTGTGTCCAAAACATCTCGAGTTGTCCATGTTTTATCACCGGCGTCAGCACGCGGTCCGAGAGTCTCCGGCGGAGGGGGAAAAAGAGGACTTCTTCCAGGATAAAGGCGAAATTTGGTGAcgAGAAGTGAAGAAACTGTGAAAGGTCTCTGCTCCCACCTCTAG
>TCONS_00016701
GTAGTCCCACAAACATCGGCGTTTCCCTTTCTGCAGCTGTCCGAAAGCGACACAATCTCTTCCTCTCAATGACTGGTCGTCTGCTCAAAGTTTTCAACAATCTGATTTGCGATTCTCTCCCAAATATGCGACAAATAGCatcgagagagagaaaaaatgaaTATCAGATCACTGTTTTCTTGTTGGAAAGGAGTGGGCGTTGAAGGAGAAAGATTGGGGGGGAAACGAGCTTTGTATCGCGGTGTCTTTCCCTTGGGTTCACCACGTTGTTTTTGAGCACTTATAATTTCCTTTGTTGTGTCCAAAACATCTCGAGTTGTCCATGTTTTATCACCGGCGTCAGCACGCGGTCCGAGAGTCTCCGGCGGAGGGGGAAAAAGAGGACTTCTTCCAGGATAAAGGCGAAATTTGGTGAcgGCCAAGACTCTGGACAATGTTCTGCAGGAGACAAACTCACGATCCTTCACTGCAGTTGAAGGACAGAACAGATGTGCTGAGGGAAAGCAGATCTGATTCTCCAGCTTTTTAACAAGTATCCTATGAAGTGAGAAATGGTGTTTAGAGACTGAACTGCTGAGATCTTCGTCTAGATGCTGCAGGGTTTTATGACTCTGTTGGAATGAGACTTAAAACTGCATAAGTTAGAATTACTGAAATATTCTATTTACCAGAAGTGGGCCCTGCATGAAATTGGTGTGGGCTAGAGCCGGCATCACTGGCTCATTTGTCTTGGAGCTGCCAAAATTATCATCTTACTGGGAAAACATTTTTCTAACATTCTCAAAAATAGGTGAAAAGCCAGTAGATCCAGATCTCCGTATCGAAGAGATTATAGTGATTTTGAGATAGCTAAAAACAGCACAGAACAAAATATAGTTTCATTTGTCTGTCTACTAGAACaaagtttaatattattaaactggaaacagaatgaaaacagttgaagtcagaattattagcccccctttattttttttttatttttcaaatatttcccaaatgatgtttaacagagcaaggaaattttcacagtatgtctgataatattttttcttctggagaaagtcttatttgttttatttcggctagagcaaaagcaattttaattttttttaaaaaacaatttaaggttaaaattataagcctctttaagctatatttttcaaactgtctacagaacaaaccatcattatacaataacttgcctaattacc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097094

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018889 False 565 lncRNA 0.47 2 8762474 8764113
TCONS_00016701 True 1214 lncRNA 0.39 2 8762580 8765029

Neighbor

gene id symbol gene type direction distance location
XLOC_008318 CR293508.3 coding upstream 30608 8731752 ~ 8731866 (+)
XLOC_008317 CR293508.2 coding upstream 79537 8682822 ~ 8682937 (+)
XLOC_008316 tmem160 coding upstream 362383 8394819 ~ 8400091 (+)
XLOC_008315 egln2 coding upstream 379477 8335600 ~ 8382997 (+)
XLOC_008314 mipep coding upstream 526945 8192715 ~ 8235529 (+)
XLOC_008320 ap2s1 coding downstream 2621 8767650 ~ 8799977 (+)
XLOC_008321 CR925772.1 coding downstream 274021 9039050 ~ 9039164 (+)
XLOC_008322 ppm1na coding downstream 288030 9053059 ~ 9069172 (+)
XLOC_008323 si:dkey-202g17.3 coding downstream 307792 9072821 ~ 9089507 (+)
XLOC_008324 ptgir coding downstream 352301 9117330 ~ 9184449 (+)
XLOC_008463 BX663520.1 misc downstream 12487162 21252191 ~ 21252282 (+)
XLOC_008312 CR589941.1 non-coding upstream 956554 7805779 ~ 7805920 (+)
XLOC_008311 NA non-coding upstream 1024943 7734489 ~ 7737531 (+)
XLOC_008306 NA non-coding upstream 1886926 6867276 ~ 6875548 (+)
XLOC_008325 CU467862.1 non-coding downstream 440235 9205264 ~ 9211131 (+)
XLOC_008329 FP016239.1 non-coding downstream 649124 9414153 ~ 9418151 (+)
XLOC_008330 CR936974.1 non-coding downstream 686949 9451978 ~ 9457382 (+)
XLOC_008331 NA non-coding downstream 875658 9640687 ~ 9649456 (+)

Expression


Co-expression Network